7p12.1

Sections: General Information - Query T1DMart for overlapping human marker information - Region Overview - Genes in LD Region - Signal Clouds - Publications

General Information Top Help

General Information: Available

Organism	Human
Points of Interest	rs4948088
Karyotype Band Location	7p12.1
Chromosomal Location (NCBI36)	Chr7:50866662-51640000
Region Size	0.77 Mb
Orthologous Regions	Mouse: Human 7p12.1 Ortholgous Region Mouse: Human 7p12.1 Ortholgous Region Rat: Human 7p12.1 Ortholgous Region
Genes in Region (3)	COBL, LOC100131871, LOC100133177

Query T1DMart for overlapping human marker information from T1DMart Top Help

Non-Synonymous SNPs in region dbSNP_130:

Region Overview Top Help

GBrowse Image: Available

An overview of the region is provided by GBrowse. Tracks shown include gene information and study-specific data:
D' (black) and r-squared (red) with genotyped SNP	Calculated using the HapMap CEU Founders population. D' data has been limited to those values where LOD score > 3
HapMap Recobination Data	Genome-wide recombination rate from Phase 2 HapMap estimated from phased haplotypes in HapMap Release 22 (NCBI 36). Units are in cM/Mb.
P-values, -log(p)	1 degree of freedom p-values, stratified by geographic location. Generated using snpMatrix with data from the T1DGC Meta-analysis study.

Genes in LD Region Top Help

Genes in LD Region: Not Available

Signal Clouds Top Help

Signal Clouds: Available

Publications Top Help

Publications Associated with this region: 1