7p15.2

General Information Top Help

General Information: Available

Organism	Human
Points of Interest	rs7804356
Karyotype Band Location	7p15.2
Chromosomal Location (GRCh37)	Chr7:26657962-27205282
Region Size	0.55 Mb
Orthologous Regions	Mouse: Human 7p15.2 Orthologous Region Rat: Human 7p15.2 Orthologous Region
Genes in Region (13)	C7orf71, HOTAIRM1, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, LOC100133311, LOC285943, SKAP2

View this region in the Human T1D Regions table.

Query T1DMart for overlapping human marker information from T1DMart Top Help

Marker	Marker Source	Start	Strand	Peptide Shift	Gene Symbol (HGNC)	Gene ID (Entrez)	Amino Acid Position
rs116854597	dbSNP_134	26678789	+	T/N	C7orf71	285941	9
rs78525926	dbSNP_134	26678881	+	G/S	C7orf71	285941	40
rs114298106	dbSNP_134	26678899	+	E/K	C7orf71	285941	46
rs78653055	dbSNP_134	26678926	+	A/T	C7orf71	285941	55
rs139117948	dbSNP_134	26685929	+	A/T	C7orf71	285941	94
rs114775093	dbSNP_134	26685935	+	G/R	C7orf71	285941	96
rs113781509	dbSNP_134	26709735	+	E/G	SKAP2	8935	355
rs117480064	dbSNP_134	26709790	+	W/G	SKAP2	8935	337
rs142511976	dbSNP_134	26729975	+	E/V	SKAP2	8935	268
rs17154402	dbSNP_134	26765085	+	S/T	SKAP2	8935	253
rs138740188	dbSNP_134	26765169	+	I/T	SKAP2	8935	225
rs1129771	dbSNP_134	26765596	-	A/S	SKAP2	8935	202
rs150725979	dbSNP_134	26766518	+	D/N	SKAP2	8935	193
rs146206173	dbSNP_134	26778443	+	T/M	SKAP2	8935	147
rs140944912	dbSNP_134	26883699	+	I/T	SKAP2	8935	86
rs147926422	dbSNP_134	26883735	+	E/G	SKAP2	8935	74
rs112160989	dbSNP_134	26893764	+	Q/R	SKAP2	8935	64
rs140223829	dbSNP_134	26894405	+	I/F	SKAP2	8935	58
rs145659190	dbSNP_134	26894430	+	I/M	SKAP2	8935	49
rs151047705	dbSNP_134	26894432	+	I/V	SKAP2	8935	49
rs140914133	dbSNP_134	26903991	+	L/V	SKAP2	8935	20
rs137938529	dbSNP_134	26904014	+	P/L	SKAP2	8935	12
rs17500494	dbSNP_134	27134966	+	R/S	HOXA1	3198	121
rs150540921	dbSNP_134	27134970	+	P/Q	HOXA1	3198	120
rs10951154	dbSNP_134	27135314	+	H/R	HOXA1	3198	73
rs146782650	dbSNP_134	27135338	+	H/P	HOXA1	3198	65
rs144288739	dbSNP_134	27135381	+	D/H	HOXA1	3198	51
rs146737549	dbSNP_134	27135390	+	G/S	HOXA1	3198	48
rs140318803	dbSNP_134	27135437	+	H/R	HOXA1	3198	32
rs104894017	dbSNP_134	27135448	-	Y/X	HOXA1	3198	28
rs150376380	dbSNP_134	27135453	+	A/T	HOXA1	3198	27
rs104894018	dbSNP_134	27135456	-	R/X	HOXA1	3198	26
rs149108490	dbSNP_134	27140470	+	L/I	HOXA2	3199	336
rs143043350	dbSNP_134	27140497	+	V/I	HOXA2	3199	327
rs138940688	dbSNP_134	27140509	+	Q/K	HOXA2	3199	323
rs41303375	dbSNP_134	27140596	+	V/L	HOXA2	3199	294
rs138479880	dbSNP_134	27140662	+	F/V	HOXA2	3199	272
rs150696747	dbSNP_134	27140670	+	S/F	HOXA2	3199	269
rs116885108	dbSNP_134	27140786	+	K/N	HOXA2	3199	230
rs146316132	dbSNP_134	27140821	+	D/Y	HOXA2	3199	219
rs61740490	dbSNP_134	27140867	+	Q/H	HOXA2	3199	203
rs941002	dbSNP_134	27140890	-	M/L	HOXA2	3199	196
rs119489104	dbSNP_134	27140920	-	Q/K	HOXA2	3199	186
rs139504171	dbSNP_134	27141082	+	S/T	HOXA2	3199	132
rs146562288	dbSNP_134	27142094	+	I/T	HOXA2	3199	9
rs71554077	dbSNP_134	27147607	+	T/H	HOXA3	3200	420
rs148881843	dbSNP_134	27147739	+	S/N	HOXA3	3200	376
rs111910536	dbSNP_134	27147742	+	M/T	HOXA3	3200	375
rs150165110	dbSNP_134	27147967	+	P/L	HOXA3	3200	300
rs138670627	dbSNP_134	27148042	+	G/D	HOXA3	3200	275
rs141075773	dbSNP_134	27148057	+	P/H	HOXA3	3200	270
rs146963463	dbSNP_134	27148190	+	N/D	HOXA3	3200	226
rs137977036	dbSNP_134	27148234	+	H/L	HOXA3	3200	211
rs149479622	dbSNP_134	27148285	+	A/V	HOXA3	3200	194
rs144351903	dbSNP_134	27148297	+	S/W	HOXA3	3200	190
rs148350002	dbSNP_134	27149857	+	P/S	HOXA3	3200	135
rs141597317	dbSNP_134	27149878	+	P/S	HOXA3	3200	128
rs78276647	dbSNP_134	27150088	+	A/S	HOXA3	3200	58
rs35614593	dbSNP_134	27150119	+	R/R	HOXA3	3200	47
rs146381041	dbSNP_134	27150133	+	G/S	HOXA3	3200	43
rs147923565	dbSNP_134	27168848	+	I/T	HOXA4	3201	320
rs17500757	dbSNP_134	27168858	+	P/S	HOXA4	3201	317
rs66569027	dbSNP_134	27168882	+	P/P	HOXA4	3201	308
rs146095481	dbSNP_134	27168887	+	H/R	HOXA4	3201	307
rs139808484	dbSNP_134	27168896	+	L/R	HOXA4	3201	304
rs140104112	dbSNP_134	27168938	+	S/C	HOXA4	3201	290
rs112102841	dbSNP_134	27168948	+	A/T	HOXA4	3201	287
rs41305924	dbSNP_134	27168999	+	W/R	HOXA4	3201	270
rs6976847	dbSNP_134	27169056	+	T/P	HOXA4	3201	251
rs145032542	dbSNP_134	27169157	+	R/H	HOXA4	3201	217
rs13246088	dbSNP_134	27169821	+	L/F	HOXA4	3201	178
rs10251056	dbSNP_134	27169934	+	L/P	HOXA4	3201	140
rs6944345	dbSNP_134	27170145	+	T/P	HOXA4	3201	70
rs6962314	dbSNP_134	27170159	+	G/D	HOXA4	3201	65
rs77150951	dbSNP_134	27170168	-	H/P	HOXA4	3201	62
rs148653911	dbSNP_134	27170275	+	H/Q	HOXA4	3201	26
rs144521145	dbSNP_134	27170286	+	Y/H	HOXA4	3201	23
rs147843309	dbSNP_134	27170307	+	K/E	HOXA4	3201	16
rs141143994	dbSNP_134	27170344	+	M/I	HOXA4	3201	3
rs150925292	dbSNP_134	27181575	+	A/V	HOXA5	3202	231
rs150111660	dbSNP_134	27182718	+	P/L	HOXA5	3202	170
rs35281041	dbSNP_134	27182828	+	G/G	HOXA5	3202	133
rs145906139	dbSNP_134	27183139	+	V/M	HOXA5	3202	30
rs143040629	dbSNP_134	27183162	+	H/R	HOXA5	3202	22
rs141474913	dbSNP_134	27185411	+	N/Y	HOXA6	3203	190
rs139581191	dbSNP_134	27186944	+	R/Q	HOXA6	3203	142
rs139795399	dbSNP_134	27186968	+	S/I	HOXA6	3203	134
rs62454418	dbSNP_134	27187029	+	D/Y	HOXA6	3203	114
rs145294674	dbSNP_134	27187101	+	P/S	HOXA6	3203	90
rs143079352	dbSNP_134	27194539	+	E/K	HOXA7	3204	228
rs140671509	dbSNP_134	27194572	+	D/N	HOXA7	3204	217
rs138411797	dbSNP_134	27194596	+	A/T	HOXA7	3204	209
rs147555041	dbSNP_134	27194632	+	A/S	HOXA7	3204	197
rs35510017	dbSNP_134	27195857	+	K/R	HOXA7	3204	103
rs144742215	dbSNP_134	27195915	+	S/T	HOXA7	3204	84
rs148543265	dbSNP_134	27195938	+	A/V	HOXA7	3204	76
rs139653572	dbSNP_134	27196049	+	G/V	HOXA7	3204	39
rs2301721	dbSNP_134	27196113	+	A/T	HOXA7	3204	18
rs145778968	dbSNP_134	27196115	+	G/A	HOXA7	3204	17
rs78410337	dbSNP_134	27196116	+	G/R	HOXA7	3204	17
rs75308588	dbSNP_134	27196137	+	A/A	HOXA7	3204	9
rs149657061	dbSNP_134	27196161	+	S/G	HOXA7	3204	2
rs145450895	dbSNP_134	27203269	+	R/W	HOXA9	3205	258
rs140314505	dbSNP_134	27203328	+	E/A	HOXA9	3205	238
rs144037880	dbSNP_134	27203346	+	T/S	HOXA9	3205	232
rs35991882	dbSNP_134	27203373	-	K/T	HOXA9	3205	223
rs141326540	dbSNP_134	27203385	+	L/P	HOXA9	3205	219
rs140596580	dbSNP_134	27204512	+	P/T	HOXA9	3205	189
rs150410478	dbSNP_134	27204526	+	S/N	HOXA9	3205	184
rs138291525	dbSNP_134	27204564	+	S/R	HOXA9	3205	171
rs150821305	dbSNP_134	27204621	+	L/F	HOXA9	3205	152
rs147261225	dbSNP_134	27204653	+	G/S	HOXA9	3205	142
rs11978680	dbSNP_134	27204865	+	H/P	HOXA9	3205	71
rs144156398	dbSNP_134	27205005	+	E/D	HOXA9	3205	24

Non-Synonymous SNPs in region dbSNP134:

Region Overview Top Help

(Human) GRCh37 - chr7:26657962..27205282 (547.32 kb) View in Genome Browser

An overview of the region is provided by GBrowse. Tracks shown include gene information and study-specific data:
Immune Disease Associated Variants	Variants shown to be associated with different auto-immune diseases
P-values, -log(p)	1 degree of freedom p-values, stratified by geographic location. Generated using snpMatrix with data from the T1DGC Meta-analysis study.
HapMap Recobination Data	Genome-wide recombination rate from Phase 2 HapMap estimated from phased haplotypes in HapMap Release 22 (NCBI 36). Units are in cM/Mb, coordinates have been projected to the current build.

Genes in LD Region Top Help

Genes in LD Region: Available

Summary data derived from GWA meta analysis Barrett et al. LD regions were calculated using different r² and D' threshold values, and these regions were then examined for genes. The definition of a gene location includes a 3kb flanking region either side of the gene.

Marker Data

Region Data

Links

r² Threshold

D' Threshold

Region

Genes