6q22.32

General Information Top Help

General Information: Available

Organism	Human
Points of Interest	rs9388489
Karyotype Band Location	6q22.32
Chromosomal Location (GRCh37)	Chr6:126438029-127419834
Region Size	0.98 Mb
Orthologous Regions	Mouse: Human 6q22.32 Orthologous Region Rat: Human 6q22.32 Orthologous Region
Genes in Region (3)	CENPW, LOC728666, MIR588

View this region in the Human T1D Regions table.

Query T1DMart for overlapping human marker information from T1DMart Top Help

Marker	Marker Source	Start	Strand	Peptide Shift	Gene Symbol (HGNC)	Gene ID (Entrez)	Amino Acid Position
rs142786698	dbSNP_134	126661442	+	S/F	CENPW	387103	8
rs41285260	dbSNP_134	126661502	+	R/L	CENPW	387103	28
rs140051577	dbSNP_134	126667357	+	L/V	CENPW	387103	45
rs143719119	dbSNP_134	126667399	+	R/G	CENPW	387103	59
rs146477102	dbSNP_134	126667415	+	A/V	CENPW	387103	64

Non-Synonymous SNPs in region dbSNP134:

Region Overview Top Help

(Human) GRCh37 - chr6:126438029..127419834 (981.80 kb) View in Genome Browser

An overview of the region is provided by GBrowse. Tracks shown include gene information and study-specific data:
Immune Disease Associated Variants	Variants shown to be associated with different auto-immune diseases
P-values, -log(p)	1 degree of freedom p-values, stratified by geographic location. Generated using snpMatrix with data from the T1DGC Meta-analysis study.
HapMap Recobination Data	Genome-wide recombination rate from Phase 2 HapMap estimated from phased haplotypes in HapMap Release 22 (NCBI 36). Units are in cM/Mb, coordinates have been projected to the current build.

Genes in LD Region Top Help

Genes in LD Region: Available

Summary data derived from GWA meta analysis Barrett et al. LD regions were calculated using different r² and D' threshold values, and these regions were then examined for genes. The definition of a gene location includes a 3kb flanking region either side of the gene.

Marker Data

Region Data

Links

r² Threshold

D' Threshold

Region

Genes