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3p21.31

Sections: General Information - Query T1DMart for overlapping human marker information - Region Overview - Genes in LD Region - Signal Clouds - Publications
Chromosome 3 3p21.31 Clickable Image Map of Human Genome
  General Information   Top   Help
expander General Information: Available
Organism Human
Points of Interest rs333,rs11711054
Karyotype Band Location 3p21.31
Chromosomal Location (NCBI36) Chr3:45955677-46629136
Region Size 0.67 Mb
Genes in Region (12) CCR1, CCR2, CCR3, CCR5, CCRL2, CXCR6, FYCO1, LRRC2, LTF, RTP3, TDGF1, XCR1
  Query T1DMart for overlapping human marker information from T1DMart   Top   Help
expander Non-Synonymous SNPs in region dbSNP_130:
  Region Overview   Top   Help
expander GBrowse Image: Available
  Genes in LD Region   Top   Help
expander Genes in LD Region: Available
Summary data derived from GWA meta analysis Barrett et al. LD regions were calculated using different r² and D' threshold values, and these regions were then examined for genes. The definition of a gene location includes a 3kb flanking region either side of the gene.
Marker Data Region Data Links
r2 Threshold D' Threshold Region Genes
         
Marker rs11711054
Chr3
Position46320615
Strand+
P-Value1.69e-05
N/A 0.5 chr3: 46249113..46454212 CCR3 CCR5 LTF CCR2 CCRL2
LD Region Feature File
LD File
0.4 N/A chr3: 46255198..46377022 CCR3 CCR2
0.8 N/A chr3: 46320615..46374802 CCR2
1 N/A chr3: 46320615..46341273
  Signal Clouds   Top   Help
expander Signal Clouds: Available
  Publications   Top   Help
expander Publications Associated with this region: 2
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