1q32.1

Sections: General Information - Query T1DMart for overlapping human marker information - Region Overview - Genes in LD Region - Signal Clouds - Publications

General Information Top Help

General Information: Available

Organism	Human
Points of Interest	rs3024505
Karyotype Band Location	1q32.1
Chromosomal Location (NCBI36)	Chr1:204869063-205116454
Region Size	0.25 Mb
Genes in Region (5)	DYRK3, IL10, IL19, IL20, MAPKAPK2

Query T1DMart for overlapping human marker information from T1DMart Top Help

Marker	Marker Source	Start	Strand	Peptide Shift	Gene Symbol (HGNC)	Gene ID (Entrez)	Amino Acid Position
rs55721647	dbSNP_130	204887746	+	D/Y	DYRK3	8444	174
rs35259411	dbSNP_130	204887752	+	A/T	DYRK3	8444	176
rs56079317	dbSNP_130	204887861	+	R/Q	DYRK3	8444	212
rs56374404	dbSNP_130	204887908	+	R/C	DYRK3	8444	228
rs55766763	dbSNP_130	204887986	+	M/L	DYRK3	8444	254
rs17851298	dbSNP_130	204888104	+	R/H	DYRK3	8444	293
rs55982485	dbSNP_130	204888148	+	K/E	DYRK3	8444	308
rs35968381	dbSNP_130	204888208	+	R/P	DYRK3	8444	328
rs1129431	dbSNP_130	204888218	+	T/I	DYRK3	8444	331
rs1129432	dbSNP_130	204888352	+	G/R	DYRK3	8444	376
rs35021645	dbSNP_130	204888479	+	R/H	DYRK3	8444	418
rs35671930	dbSNP_130	204969397	+	A/G	MAPKAPK2	9261	173
rs2243191	dbSNP_130	205082580	+	F/S	IL19	29949	175
rs35856950	dbSNP_130	205106546	-	R/Q	IL20	50604	107

Non-Synonymous SNPs in region dbSNP_130:

Region Overview Top Help

GBrowse Image: Available

An overview of the region is provided by GBrowse. Tracks shown include gene information and study-specific data:
D' (black) and r-squared (red) with genotyped SNP	Calculated using the HapMap CEU Founders population. D' data has been limited to those values where LOD score > 3
HapMap Recobination Data	Genome-wide recombination rate from Phase 2 HapMap estimated from phased haplotypes in HapMap Release 22 (NCBI 36). Units are in cM/Mb.
P-values, -log(p)	1 degree of freedom p-values, stratified by geographic location. Generated using snpMatrix with data from the T1DGC Meta-analysis study.

Genes in LD Region Top Help

Genes in LD Region: Available

Summary data derived from GWA meta analysis Barrett et al. LD regions were calculated using different r² and D' threshold values, and these regions were then examined for genes. The definition of a gene location includes a 3kb flanking region either side of the gene.

Marker Data

Region Data

Links

r² Threshold

D' Threshold

Region

Genes