1q31.2

Sections: General Information - Query T1DMart for overlapping human marker information - Region Overview - Genes in LD Region - Signal Clouds - Publications

General Information Top Help

General Information: Available

Organism	Human
Points of Interest	rs2816316
Karyotype Band Location	1q31.2
Chromosomal Location (NCBI36)	Chr1:190728079-190816535
Region Size	0.09 Mb
Genes in Region (1)	RGS1

Query T1DMart for overlapping human marker information from T1DMart Top Help

Marker	Marker Source	Start	Strand	Peptide Shift	Gene Symbol (HGNC)	Gene ID (Entrez)	Amino Acid Position
rs11370469	dbSNP_130	190811671	+	R/S	RGS1	5996	42
rs34270164	dbSNP_130	190814969	+		RGS1	5996	175

Non-Synonymous SNPs in region dbSNP_130:

Region Overview Top Help

GBrowse Image: Available

An overview of the region is provided by GBrowse. Tracks shown include gene information and study-specific data:
D' (black) and r-squared (red) with genotyped SNP	Calculated using the HapMap CEU Founders population. D' data has been limited to those values where LOD score > 3
HapMap Recobination Data	Genome-wide recombination rate from Phase 2 HapMap estimated from phased haplotypes in HapMap Release 22 (NCBI 36). Units are in cM/Mb.
P-values, -log(p)	1 degree of freedom p-values, stratified by geographic location. Generated using snpMatrix with data from the T1DGC Meta-analysis study.

Genes in LD Region Top Help

Genes in LD Region: Available

Summary data derived from GWA meta analysis Barrett et al. LD regions were calculated using different r² and D' threshold values, and these regions were then examined for genes. The definition of a gene location includes a 3kb flanking region either side of the gene.

Marker Data

Region Data

Links

r² Threshold

D' Threshold

Region

Genes

Marker	rs2816316
Chr	1
Position	190803436
Strand	-
P-Value	3.13e-05

N/A

0.5

chr1: 190744505..190811722

RGS1

LD Region Feature File

LD File

0.4

N/A

chr1: 190744505..190811722

RGS1

0.8

N/A

chr1: 190786488..190811722

RGS1

N/A

chr1: 190803074..190811722

RGS1

Signal Clouds Top Help

Signal Clouds: Available

Publications Top Help

Publications Associated with this region: 2