6p21.31

Sections: General Information - Query T1DMart for overlapping human marker information - Region Overview - Genes in LD Region - Publications

General Information Top Help

General Information: Available

Organism	Human
Points of Interest	Confirmed Genetic Region
Karyotype Band Location	6p21.31-6p21.31
Chromosomal Location (NCBI36)	Chr6:32381849-33606563
Region Size	1.22 Mb
Genes in Region (43)	B3GALT4, BRD2, BTNL2, C6orf10, COL11A2, CUTA, DAXX, HLA-DMA, HLA-DMB, HLA-DOA, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DPB2, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, HNRNPA1P2, HSD17B8, KIFC1, LYPLA2P1, PFDN6, PHF1, PSMB8, PSMB9, RGL2, RING1, RPS18, RXRB, SLC39A7, SYNGAP1, TAP1, TAP2, TAPBP, VPS52, WDR46, ZBTB22, ZBTB9

Query T1DMart for overlapping human marker information from T1DMart Top Help

Non-Synonymous SNPs in region dbSNP_130:

Marker	Marker Source	Start	Strand	Peptide Shift	Gene Symbol (HGNC)	Gene ID (Entrez)	Amino Acid Position
rs73396905	dbSNP_130	32398889	+	P/L	C6orf10	10665	181
rs9405090	dbSNP_130	32406350	+	S/P	C6orf10	10665	170
rs1003878	dbSNP_130	32407800	-	P/L	C6orf10	10665	161
rs1265754	dbSNP_130	32411670	-	I/F	C6orf10	10665	150
rs1033500	dbSNP_130	32415360	-	P/L	C6orf10	10665	128
rs9268368	dbSNP_130	32441933	+	Y/C	C6orf10	10665	69
rs9268384	dbSNP_130	32444564	+	Y/H	C6orf10	10665	36
rs3129941	dbSNP_130	32445664	+	C/R	C6orf10	10665	30
rs28362675	dbSNP_130	32470499	-	G/C	BTNL2	56244	454
rs28362676	dbSNP_130	32470680	-	P/Q	BTNL2	56244	393
rs41521946	dbSNP_130	32470681	-	P/Q	BTNL2	56244	393
rs28362677	dbSNP_130	32470719	-	M/I	BTNL2	56244	380
rs28362678	dbSNP_130	32470723	-	P/L	BTNL2	56244	379
rs2076530	dbSNP_130	32471794	-	S/G	BTNL2	56244	360
rs35037492	dbSNP_130	32471818	-	A/T	BTNL2	56244	352
rs41441651	dbSNP_130	32471866	-	D/N	BTNL2	56244	336
rs28362679	dbSNP_130	32471871	-	S/L	BTNL2	56244	334
rs41417449	dbSNP_130	32471989	-	M/V	BTNL2	56244	295
rs36110770	dbSNP_130	32472022	-	R/X	BTNL2	56244	284
rs34423804	dbSNP_130	32472024	-	D/V	BTNL2	56244	283
rs41355746	dbSNP_130	32472030	-	R/K	BTNL2	56244	281
rs28362680	dbSNP_130	32478794	-	A/V	BTNL2	56244	202
rs2076523	dbSNP_130	32478813	-	K/E	BTNL2	56244	196
rs9461742	dbSNP_130	32478837	+	V/M	BTNL2	56244	188
rs28362681	dbSNP_130	32478857	-	R/Q	BTNL2	56244	181
rs60740710	dbSNP_130	32478949	+		BTNL2	56244	150
rs60263670	dbSNP_130	32478953	+	S/N	BTNL2	56244	149
rs28362682	dbSNP_130	32480841	-	W/R	BTNL2	56244	94
rs41457146	dbSNP_130	32480940	-	V/M	BTNL2	56244	61
rs16822586	dbSNP_130	32515751	+	V/L	HLA-DRA	3122	16
rs58547911	dbSNP_130	32519381	+		HLA-DRA	3122	204
rs7192	dbSNP_130	32519624	+	L/V	HLA-DRA	3122	242
rs71547362	dbSNP_130	32593502	+	V/L	HLA-DRB5	3127	265
rs71778836	dbSNP_130	32593511	+		HLA-DRB5	3127	262
rs71547381	dbSNP_130	32593816	+	H/Q	HLA-DRB5	3127	260
rs41553512	dbSNP_130	32594380	-	V/I	HLA-DRB4	3126	232
rs41553512	dbSNP_130	32594380	-	V/I	HLA-DRB5	3127	232
rs1136905	dbSNP_130	32594415	-	R/Q	HLA-DRB1	3123	220
rs1136905	dbSNP_130	32594415	-	R/Q	HLA-DRB4	3126	220
rs1136905	dbSNP_130	32594415	-	Q/R	HLA-DRB5	3127	220