6p21.33

Sections: General Information - Query T1DMart for overlapping human marker information - Region Overview - Genes in LD Region - Publications

General Information Top Help

General Information: Available

Organism	Human
Points of Interest	Confirmed Genetic Region
Karyotype Band Location	6p21.33
Chromosomal Location (NCBI36)	Chr6:30018000-31434000
Region Size	1.42 Mb
Genes in Region (50)	ABCF1, C6orf134, C6orf136, C6orf15, CCHCR1, CDSN, DDR1, DHX16, DPCR1, FLOT1, GNL1, GTF2H4, HCG18, HCG22, HCG27, HCG9, HLA-A, HLA-B, HLA-C, HLA-E, HLA-H, HLA-J, IER3, KIAA1949, LOC729792, MDC1, MRPS18B, MUC21, NCRNA00171, NRM, POU5F1, PPP1R10, PPP1R11, PRR3, PSORS1C1, PSORS1C2, PSORS1C3, RNF39, RPP21, SFTA2, TCF19, TRIM10, TRIM15, TRIM26, TRIM31, TRIM39, TRIM40, TUBB, VARS2, ZNRD1 More Available...

Query T1DMart for overlapping human marker information from T1DMart Top Help

Non-Synonymous SNPs in region dbSNP_130:

Marker	Marker Source	Start	Strand	Peptide Shift	Gene Symbol (HGNC)	Gene ID (Entrez)	Amino Acid Position
rs41541013	dbSNP_130	30018316	+	V/I	HLA-A	3105	3
rs41541013	dbSNP_130	30018316	+	V/I	HLA-A29.1	649853	3
rs41541013	dbSNP_130	30018316	+	V/I	LOC100133382	100133382	3
rs41541913	dbSNP_130	30018322	+	A/P	HLA-A	3105	5
rs41541913	dbSNP_130	30018322	+	A/P	HLA-A29.1	649853	5
rs41541913	dbSNP_130	30018322	+	A/P	LOC100133382	100133382	5
rs1143146	dbSNP_130	30018337	+	L/V	HLA-A	3105	10
rs1143146	dbSNP_130	30018337	+	L/V	HLA-A29.1	649853	10
rs1143146	dbSNP_130	30018337	+	V/L	LOC100133382	100133382	10
rs2230954	dbSNP_130	30018350	+	S/L	HLA-A	3105	14
rs2230954	dbSNP_130	30018350	+	L/S	HLA-A29.1	649853	14
rs2230954	dbSNP_130	30018350	+	S/L	LOC100133382	100133382	14
rs41548119	dbSNP_130	30018355	+		HLA-A	3105	16
rs41548119	dbSNP_130	30018355	+		HLA-A29.1	649853	16
rs41548119	dbSNP_130	30018355	+		LOC100133382	100133382	16
rs41554816	dbSNP_130	30018356	+	A/V	HLA-A	3105	16
rs41554816	dbSNP_130	30018356	+	A/V	HLA-A29.1	649853	16
rs41554816	dbSNP_130	30018356	+	A/V	LOC100133382	100133382	16
rs41564012	dbSNP_130	30018376	+	W/R	HLA-A	3105	23
rs41564012	dbSNP_130	30018376	+	W/R	HLA-A29.1	649853	23
rs41564012	dbSNP_130	30018376	+	W/R	LOC100133382	100133382	23
rs41541319	dbSNP_130	30018520	+	H/Q	HLA-A	3105	27
rs41541319	dbSNP_130	30018520	+	H/Q	HLA-A29.1	649853	27
rs41541319	dbSNP_130	30018520	+	H/Q	LOC100133382	100133382	27
rs72555394	dbSNP_130	30018526	+	M/I	HLA-A	3105	29
rs72555394	dbSNP_130	30018526	+	M/I	HLA-A29.1	649853	29
rs72555394	dbSNP_130	30018526	+	M/I	LOC100133382	100133382	29
rs45585732	dbSNP_130	30018528	+	R/K	HLA-A	3105	30
rs45585732	dbSNP_130	30018528	+	R/K	HLA-A29.1	649853	30
rs45585732	dbSNP_130	30018528	+	R/K	LOC100133382	100133382	30
rs41557419	dbSNP_130	30018529	+	R/S	HLA-A	3105	30
rs41557419	dbSNP_130	30018529	+	R/S	HLA-A29.1	649853	30
rs41557419	dbSNP_130	30018529	+	R/S	LOC100133382	100133382	30
rs41542421	dbSNP_130	30018531	+	Y/C	HLA-A	3105	31
rs41542421	dbSNP_130	30018531	+	Y/C	HLA-A29.1	649853	31
rs41542421	dbSNP_130	30018531	+	Y/C	LOC100133382	100133382	31
rs1136659	dbSNP_130	30018536	+	F/I	HLA-A	3105	33
rs1136659	dbSNP_130	30018536	+	T/S	HLA-A29.1	649853	33
rs1136659	dbSNP_130	30018536	+	Y/N	LOC100133382	100133382	33
rs2075684	dbSNP_130	30018537	-	F/Y	HLA-A	3105	33