7p12.2

General Information Top Help

General Information: Available

Organism	Human
Points of Interest	rs10272724
Karyotype Band Location	7p12.2
Chromosomal Location (GRCh37)	Chr7:50366637-50695317
Region Size	0.33 Mb
Orthologous Regions	Mouse: Human 7p12.2 Orthologous Region Rat: Human 7p12.2 Orthologous Region
Genes in Region (6)	DDC, FIGNL1, GRB10, IKZF1, LOC100129427, LOC100507042

View this region in the Human T1D Regions table.

Region Overview from Genome Browser Top Help

(Human) GRCh37 - chr7:50366637..50695317 (328.68 kb) View in Genome Browser

An overview of the region is provided by GBrowse. Tracks shown include gene information and study-specific data:
Immune Disease Associated Variants	Variants shown to be associated with different auto-immune diseases
P-values, -log(p)	1 degree of freedom p-values, stratified by geographic location. Generated using snpMatrix with data from the T1DGC Meta-analysis study.
HapMap Recobination Data	Genome-wide recombination rate from Phase 2 HapMap estimated from phased haplotypes in HapMap Release 22 (NCBI 36). Units are in cM/Mb, coordinates have been projected to the current build.

Overlapping Marker Information from Batch Query Top Help

Marker	Marker Source	Start	Strand	Peptide Shift	Gene Symbol (HGNC)	Gene ID (Entrez)	Amino Acid Position
rs141178380	dbSNP_135	50512972	+	C/R	FIGNL1	63979	672
rs75241836	dbSNP_135	50513062	+	I/V	FIGNL1	63979	642
rs138265417	dbSNP_135	50513095	+	I/V	FIGNL1	63979	631
rs144129248	dbSNP_135	50513122	+	S/G	FIGNL1	63979	622
rs147319553	dbSNP_135	50513156	+	Q/H	FIGNL1	63979	610
rs140991399	dbSNP_135	50513160	+	T/I	FIGNL1	63979	609
rs140862457	dbSNP_135	50513225	+	C/W	FIGNL1	63979	587
rs142867266	dbSNP_135	50513400	+	D/G	FIGNL1	63979	529
rs151204868	dbSNP_135	50513410	+	V/L	FIGNL1	63979	526
rs144082857	dbSNP_135	50513539	+	R/C	FIGNL1	63979	483
rs146521755	dbSNP_135	50513569	+	K/Q	FIGNL1	63979	473
rs192313152	dbSNP_135	50513589	+	S/C	FIGNL1	63979	466
rs141070996	dbSNP_135	50513643	+	T/S	FIGNL1	63979	448
rs146680091	dbSNP_135	50513721	+	L/W	FIGNL1	63979	422
rs145459309	dbSNP_135	50513797	+	P/S	FIGNL1	63979	397
rs148860816	dbSNP_135	50513862	+	R/H	FIGNL1	63979	375
rs189665629	dbSNP_135	50513985	+	R/Q	FIGNL1	63979	334
rs148147256	dbSNP_135	50514030	+	S/F	FIGNL1	63979	319
rs144012928	dbSNP_135	50514136	+	N/D	FIGNL1	63979	284
rs146689210	dbSNP_135	50514157	+	A/T	FIGNL1	63979	277
rs114977235	dbSNP_135	50514169	+	I/V	FIGNL1	63979	273
rs113757480	dbSNP_135	50514174	+	N/S	FIGNL1	63979	271
rs143316695	dbSNP_135	50514189	+	I/T	FIGNL1	63979	266
rs79851593	dbSNP_135	50514204	+	Y/C	FIGNL1	63979	261
rs113845281	dbSNP_135	50514219	+	Q/L	FIGNL1	63979	256
rs184297998	dbSNP_135	50514237	+	A/V	FIGNL1	63979	250
rs139245614	dbSNP_135	50514268	+	V/M	FIGNL1	63979	240
rs149596053	dbSNP_135	50514279	+	I/T	FIGNL1	63979	236
rs144297981	dbSNP_135	50514297	+	S/I	FIGNL1	63979	230
rs144101936	dbSNP_135	50514327	+	L/S	FIGNL1	63979	220
rs35929700	dbSNP_135	50514340	-	H/Y	FIGNL1	63979	216
rs111559413	dbSNP_135	50514419	+	Q/H	FIGNL1	63979	189
rs142215430	dbSNP_135	50514436	+	L/F	FIGNL1	63979	184
rs140068296	dbSNP_135	50514472	+	R/W	FIGNL1	63979	172
rs150289225	dbSNP_135	50514475	+	D/H	FIGNL1	63979	171
rs78246344	dbSNP_135	50514516	+	S/F	FIGNL1	63979	157
rs112257703	dbSNP_135	50514538	+	K/E	FIGNL1	63979	150
rs10235371	dbSNP_135	50514577	+	V/M	FIGNL1	63979	137
rs112666980	dbSNP_135	50514650	+	M/I	FIGNL1	63979	112
rs143806821	dbSNP_135	50514693	+	D/G	FIGNL1	63979	98
rs150604752	dbSNP_135	50514844	+	S/T	FIGNL1	63979	48
rs113545967	dbSNP_135	50514855	+	A/V	FIGNL1	63979	44
rs142036979	dbSNP_135	50514867	+	R/H	FIGNL1	63979	40
rs146011869	dbSNP_135	50514882	+	R/H	FIGNL1	63979	35
rs139910008	dbSNP_135	50514889	+	A/T	FIGNL1	63979	33
rs62445870	dbSNP_135	50514904	+	G/R	FIGNL1	63979	28
rs143937111	dbSNP_135	50514918	+	S/C	FIGNL1	63979	23
rs148472208	dbSNP_135	50530946	+	R/X	DDC	1644	476
rs11575542	dbSNP_135	50530987	-	R/Q	DDC	1644	462
rs147562019	dbSNP_135	50531011	+	T/M	DDC	1644	454
rs142110773	dbSNP_135	50531015	+	R/C	DDC	1644	453
rs144293557	dbSNP_135	50534964	+	R/H	DDC	1644	397
rs147937771	dbSNP_135	50537775	+	R/H	DDC	1644	379
rs35517528	dbSNP_135	50544323	+	R/A	DDC	1644	347
rs140562157	dbSNP_135	50547538	+	T/M	DDC	1644	323
rs188088947	dbSNP_135	50547559	+	V/E	DDC	1644	316
rs137853209	dbSNP_135	50563067	-	F/L	DDC	1644	309
rs192811217	dbSNP_135	50566866	+	H/Y	DDC	1644	286
rs137853212	dbSNP_135	50566899	-	A/T	DDC	1644	275
rs150447169	dbSNP_135	50566914	+	V/I	DDC	1644	270
rs145025264	dbSNP_135	50571709	+	L/V	DDC	1644	255
rs137853208	dbSNP_135	50571723	-	S/F	DDC	1644	250
rs11575377	dbSNP_135	50571755	-	M/I	DDC	1644	239
rs11575376	dbSNP_135	50571757	-	M/L	DDC	1644	239
rs141265809	dbSNP_135	50595875	+	A/V	DDC	1644	225
rs150760434	dbSNP_135	50595897	+	R/S	DDC	1644	218
rs6263	dbSNP_135	50595900	-	M/V	DDC	1644	217
rs6262	dbSNP_135	50595920	-	P/L	DDC	1644	210
rs139433641	dbSNP_135	50596926	+	V/L	DDC	1644	184
rs137853210	dbSNP_135	50597037	-	S/R	DDC	1644	147
rs79842423	dbSNP_135	50605623	+	K/E	DDC	1644	124
rs192659401	dbSNP_135	50607619	+	F/L	DDC	1644	103
rs137853207	dbSNP_135	50607624	-	G/S	DDC	1644	102
rs137853211	dbSNP_135	50607656	-	A/V	DDC	1644	91
rs140276979	dbSNP_135	50607696	+	A/S	DDC	1644	78
rs147802058	dbSNP_135	50611584	+	G/E	DDC	1644	67
rs11575292	dbSNP_135	50611601	-	E/D	DDC	1644	61
rs142925706	dbSNP_135	50611606	+	V/I	DDC	1644	60
rs6264	dbSNP_135	50611735	-	V/M	DDC	1644	17
rs138828136	dbSNP_135	50611765	+	R/X	DDC	1644	7
rs67745219	dbSNP_135	50660752	+	N/K	GRB10	2887	561
rs11768472	dbSNP_135	50660762	+	D/H	GRB10	2887	558
rs148015359	dbSNP_135	50672022	+	S/Y	GRB10	2887	481
rs67489640	dbSNP_135	50680532	+		GRB10	2887	367
rs68152017	dbSNP_135	50683970	+	W/X	GRB10	2887	307
rs115496482	dbSNP_135	50694545	+	V/E	GRB10	2887	212

Non-Synonymous SNPs in region dbSNP135:

Genes in Linkage Disequilibrium Region Top Help

Genes in LD Region: Available

Signal Clouds Top Help

Signal Clouds: Available

Publications from PubMed Top Help

Publications: Not yet published

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