MDC1

  Summary from T1DBase   Top   Help
Gene Description:   mediator of DNA-damage checkpoint 1; mediator of DNA damage checkpoint 1
Synonyms:   AA413496, Mdc1, Nfbd1, KIAA0170, NFBD1, DKFZp781A0122, MDC1, 6820401C03, mKIAA0170, MGC166888
Orthologs:   Human MDC1 (protein-coding), Mouse Mdc1 (protein-coding), Rat Mdc1 (protein-coding)
 
expander Sources
  Regions of Interest Overlapping this feature from T1DBase   Top   Help
Regions Overlapping this Feature:  Human: 1 Mouse: 1
expander Associated Regions: Available
Regions were calculated based on variants available for a large study with a convincing p-value (P < 5 x 10-8) +/- 0.1cM, and then these regions were examined for genes based on the current set of T1DBase gene spans.
Region Species Chromosomal Location Mb Number of genes Marker
MHC Human chr6:29910021..33498585 3.59 688
expander Linkage Regions: Available
  Gene Overview from T1DBase   Top   Help
expander (Human) GRCh37 - chr6:30667584..30685666 (188 kb)  View in Genome Browser
expander (Mouse) NCBIM37 - chr17:35978443..35996615 (18.17 kb)  View in Genome Browser
expander (Rat) RGSC3.4 - chr20:3042953..3057607 (14.65 kb)  View in Genome Browser
  Beta Cell Gene Atlas from T1DBase   Top   Help

Users should be aware that the scale represents a rank within an experiment rather than a normalized expression signal.
 
Human Mouse Rat
ductal cells exocrine pancreas pancreatic islets primary beta cells Pancreatic Islets MPSS beta cell line pancreatic islets whole pancreas alpha cell beta cell line pancreatic islets primary beta cells whole pancreas
 
 
 
 
 
no data no data no data
 
 
 
 
 
expander Expression Legend
  Tissue Expression   Top   Help

Users should be aware that the scale represents a rank within an experiment rather than a normalized expression signal.
 
/expression/atlas-PB_CD14+_Monocytes.png /expression/atlas-PB_CD56+_NK_Cells.png /expression/atlas-PB_CD19-_B_Cells.png /expression/atlas-PB_CD4+_T_Cells.png /expression/atlas-PB_CD8+_T_Cells.png /expression/atlas-PB_BDCA4+_Dendritic_Cells.png /expression/atlas-721_B_Lymphoblasts.png /expression/atlas-Lymph_Node.png /expression/atlas-Thymus.png /expression/atlas-Salivary_Gland.png /expression/atlas-Bone_Marrow.png /expression/atlas-BM_CD34+.png /expression/atlas-Heart.png /expression/atlas-Skeletal_Muscle.png /expression/atlas-Kidney.png /expression/atlas-Liver.png /expression/atlas-Lung.png /expression/atlas-Pancreas.png /expression/atlas-Pancreatic_Islets.png /expression/atlas-Trachea.png /expression/atlas-Pituitary.png /expression/atlas-Thyroid.png /expression/atlas-Amygdala.png /expression/atlas-Caudate_Nucleus.png /expression/atlas-Cerebellum.png /expression/atlas-Hypothalamus.png /expression/atlas-Spinal_cord.png /expression/atlas-Thalamus.png /expression/atlas-Skin.png /expression/atlas-Ovary.png /expression/atlas-Placenta.png /expression/atlas-Prostate.png /expression/atlas-Testis.png /expression/atlas-Uterus.png
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
expander Expression Legend
  HaemAtlas Expression   Top   Help
Symbols represent expression compared with the overall mean. Please click 'HaemAtlasProfile' link below for associated probe mappings and a detailed profile.
CD Marker EB MK CD66b CD14 CD19 CD8 CD4 CD56
Expression Pattern High High Low Low Moderate High High High HaemAtlasProfile
expander Expression Legend
  Interactions from T1DBase   Top   Help
expander Interactions Table for MDC1:
  Cross-Reference to Pathways and GO Terms   Top   Help
expander View all
KEGG Network: None available
Biocarta: None available
expander Reactome: 7
expander NCI-Nature Pathway Interaction Database: 1
expander Gene Ontology: 13
  Publications   Top   Help
expander Publications: 118
  Model Organism Phenotype Links   Top   Help
This section provides links to model organism phenotype resources. Currently only to mouse phenotypes.
Organism Phenotype Resources
Mouse MGI:3525201 IKMC
  External Links   Top   Help
  Human Mouse Rat
Entrez Gene 9656 240087 309595
EnsEMBL Gene(s) ENSG00000137337 ENSG00000206481 ENSG00000224587 ENSG00000225589 ENSG00000228575 ENSG00000231135 ENSG00000234012 ENSG00000237095 ENSMUSG00000061607 ENSRNOG00000032813
Unigene Hs.653495 Mm.218511 Rn.106312
Homologene MDC1 Mdc1 Mdc1
OMIM 607593 N/A N/A
GeneCards MDC1 N/A N/A
Beta Cell Genomics DT.120954 DT.121386407 DT.121386444 DT.95154688 DT.530482 DT.94123626 N/A
Reactome Q14676 N/A N/A
Plasma Peptide Atlas N/A N/A N/A
MGI N/A MGI:3525201 N/A
WikiGenes 9656 240087 309595
  External resources (dkCOIN) from NIDDK Consortium Interconnectivity Network   Top   Help
dkCOIN_click Relevant resources:
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