MDC1
| Gene Description: |
mediator of DNA-damage checkpoint 1; mediator of DNA damage checkpoint 1 |
| Synonyms: |
AA413496, Mdc1, Nfbd1, KIAA0170, NFBD1, DKFZp781A0122, MDC1, 6820401C03, mKIAA0170, MGC166888 |
| Orthologs: |
Human MDC1 (protein-coding), Mouse Mdc1 (protein-coding), Rat Mdc1 (protein-coding)
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Sources
Sources
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Human-Mouse:
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HomoloGene, MGD, Inparanoid, OrthoMCL
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Human-Rat:
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Inparanoid, OrthoMCL
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Mouse-Rat:
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Inparanoid, OrthoMCL
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Possible sources:
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HomoloGene, MGD, RGD, Ensembl, Inparanoid, OrthoMCL, KEGG
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Regions of Interest Overlapping this feature from T1DBase
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Regions Overlapping this Feature:
Human: 1
Mouse: 1
Associated Regions: Available
Regions were calculated based on variants available for a large study with a convincing p-value (P < 5 x 10-8) +/- 0.1cM, and then these regions were examined for genes based on the current set of T1DBase gene spans.
Linkage Regions: Available
Gene Overview from T1DBase
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Beta Cell Gene Atlas from T1DBase
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| Users should be aware that the scale represents a rank within an experiment rather than a normalized expression signal.
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Expression Legend
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The Beta Cell Gene Atlas is a collection of almost all available public microarray
data generated with pancreatic beta cells and related cell lines and types. The
expression data comes from 131 array analyses derived from 28 experiments
(open details in a new window).
The basal (untreated cell) expression signal intensity values in each array
were converted to ranks within the experiments; the highest value was used for
genes represented by more than one probe. The rank values of genes in a given cell
type were averaged with other calculated values from experiments performed with the
same cell type. The rank transformation of the expression values enable comparison
of gene expression across different organisms and tissues.
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A red border around a cell indicates greater certainty in the data;
specifically, the gene has >0.95 probability of being expressed in the tissue.
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| Users should be aware that the scale represents a rank within an experiment rather than a normalized expression signal.
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Expression Legend
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Signal intensity values were converted to ranks within the experiments.
For genes represented by more than one probeset, we averaged the intensity
signals for each probeset across all tissues and chose the probeset with the
highest average value. The rank transformation of the expression values enables
comparison of gene expression across different organisms and tissues.
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Interactions Table for MDC1:
The MDC1 interactions are shown below. Each row lists the two interactors, the sources which document this as an interaction, a classification of the interaction as empirical or predicted, and Pubmed IDs (if any) for the interaction.
The table of interactions is downloadable as a text file. Please note that the text file will not include data from HPRD due to restrictions imposed by the HPRD funding sources.
| Interactor |
Interactor |
Sources |
Classification |
Pubmed IDs |
| MDC1 |
RAD50 |
IntAct, BioGRID |
empirical |
12607005
14519663
12607003
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| MDC1 |
CENPC1 |
BioGRID |
empirical |
14578343
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| MDC1 |
CHEK2 |
HPRD |
empirical |
12607004
12551934
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| MDC1 |
CREBBP |
HPRD |
empirical |
16051665
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| MDC1 |
CSNK2A1 |
MINT |
empirical |
18583988
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| MDC1 |
EP300 |
HPRD |
empirical |
16051665
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| MDC1 |
FANCD2 |
IntAct |
empirical |
12607005
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| MDC1 |
GATA4 |
BioGRID |
empirical |
14578343
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| MDC1 |
H2AFX |
HPRD, IntAct, BioGRID, Reactome |
empirical |
14519663
12607005
18001825
18001824
15201865
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| MDC1 |
BIRC5 |
BioGRID |
empirical |
20394854
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| MDC1 |
MDM2 |
BioGRID |
empirical |
14578343
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| MDC1 |
MRE11A |
IntAct |
empirical |
12607005
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| MDC1 |
NBN |
HPRD, MINT, IntAct, BioGRID |
empirical |
12607005
18583988
18001824
19804756
14519663
12607003
15201865
20460517
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| MDC1 |
ATM |
HPRD, IntAct |
empirical |
12607005
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| MDC1 |
ANAPC5 |
BioGRID |
empirical |
17827148
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| MDC1 |
UIMC1 |
BioGRID |
empirical |
21857162
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| MDC1 |
POLR2A |
BioGRID |
empirical |
14578343
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| MDC1 |
TERF2IP |
IntAct |
empirical |
15383534
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| MDC1 |
HDAC8 |
BioGRID |
empirical |
14578343
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| MDC1 |
USP28 |
HPRD, BioGRID |
empirical |
16901786
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| MDC1 |
BARD1 |
HPRD |
empirical |
12611903
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| MDC1 |
RAD51 |
BioGRID |
empirical |
16186822
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| MDC1 |
ANAPC1 |
BioGRID |
empirical |
17827148
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| MDC1 |
BRCA1 |
HPRD, IntAct, BioGRID |
empirical |
12607005
17525332
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| MDC1 |
TP53 |
HPRD, BioGRID |
empirical |
14519663
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| MDC1 |
TP53BP1 |
HPRD, IntAct, BioGRID |
empirical |
12607005
18986980
17925396
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| MDC1 |
UBC |
BioGRID |
empirical |
18757370
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| MDC1 |
WRN |
BioGRID |
empirical |
14578343
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| MDC1 |
MCPH1 |
BioGRID |
empirical |
16872911
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| MDC1 |
SMC1A |
HPRD, IntAct |
empirical |
12607005
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| MDC1 |
HDAC10 |
BioGRID |
empirical |
14578343
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| MDC1 |
CDC16 |
BioGRID |
empirical |
17827148
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| MDC1 |
RNF8 |
HPRD, IntAct, BioGRID |
empirical |
18001825
18001824
18006705
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| MDC1 |
MDC1 |
HPRD |
empirical |
14519663
12607005
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| MDC1 |
CDC27 |
BioGRID |
empirical |
17827148
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Cross-Reference to Pathways and GO Terms
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View all
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KEGG Network: None available
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Biocarta: None available
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Reactome: 7
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| ATM mediated phosphorylation of repair proteins | REACT_1924 |
| ATM mediated response to DNA double-strand break | REACT_204 |
| DNA Repair | REACT_216 |
| Double-Strand Break Repair | REACT_2054 |
| Homologous Recombination Repair | REACT_1874 |
| Homologous recombination repair of replication-independent double-strand breaks | REACT_1587 |
| Recruitment of repair and signaling proteins to double-strand breaks | REACT_97 |
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NCI-Nature Pathway Interaction Database: 1
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Gene Ontology: 13
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KEGG Network: None available
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Reactome: 7 |
| ATM mediated phosphorylation of repair proteins | REACT_1924 |
| ATM mediated response to DNA double-strand break | REACT_204 |
| DNA Repair | REACT_216 |
| Double-Strand Break Repair | REACT_2054 |
| Homologous Recombination Repair | REACT_1874 |
| Homologous recombination repair of replication-independent double-strand breaks | REACT_1587 |
| Recruitment of repair and signaling proteins to double-strand breaks | REACT_97 |
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Publications: 118
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MDC1 directs chromosome-wide silencing of the sex chromosomes in male germ cells.
Ichijima Y, Ichijima M, Lou Z, Nussenzweig A, Camerini-Otero RD, Chen J, Andreassen PR, Namekawa SH
Genes Dev. 2011
PubMed ID: 21536735
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MDC1 collaborates with TopBP1 in DNA replication checkpoint control.
Wang J, Gong Z, Chen J
J Cell Biol. 2011
PubMed ID: 21482717
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Mediator of DNA damage checkpoint protein 1 (MDC1) expression as a prognostic marker for nodal recurrence in early-stage breast cancer patients treated with breast-conserving surgery and radiation therapy.
Patel AN, Goyal S, Wu H, Schiff D, Moran MS, Haffty BG
Breast Cancer Res Treat. 2011
PubMed ID: 20521098
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MDC1 cleavage by caspase-3: a novel mechanism for inactivating the DNA damage response during apoptosis.
Solier S, Pommier Y
Cancer Res. 2011
PubMed ID: 21148072
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A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M, Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E, Mehmeti S, Dagand E, Schrinner S, Nürnberger A, Schmidt K, Metz K, Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S, Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN, Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S, Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P, Reymond A, Davidson DR, Dollé P, Antonarakis SE, Yaspo ML, Martinez S, Baldock RA, Eichele G, Ballabio A
PLoS Biol. 2011
PubMed ID: 21267068
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Human genetic variants of homologous recombination repair genes first found to be associated with Epstein-Barr virus antibody titers in healthy cantonese.
Shen GP, Pan QH, Hong MH, Qin HD, Xu YF, Chen LZ, Feng QS, Jorgensen TJ, Shugart YY, Zeng YX, Jia WH
Int J Cancer. 2010
PubMed ID: 21077165
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MOF and H4 K16 acetylation play important roles in DNA damage repair by modulating recruitment of DNA damage repair protein Mdc1.
Li X, Corsa CA, Pan PW, Wu L, Ferguson D, Yu X, Min J, Dou Y
Mol Cell Biol. 2010
PubMed ID: 20837706
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The viral oncoprotein tax sequesters DNA damage response factors by tethering MDC1 to chromatin.
Belgnaoui SM, Fryrear KA, Nyalwidhe JO, Guo X, Semmes OJ
J Biol Chem. 2010
PubMed ID: 20729195
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Examination of genetic polymorphisms in newborns for signatures of sex-specific prenatal selection.
Ucisik-Akkaya E, Davis CF, Do TN, Morrison BA, Stemmer SM, Amadio WJ, Tevfik Dorak M
Mol Hum Reprod. 2010
PubMed ID: 20587610
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Growth inhibition, morphology change, and cell cycle alterations in NFBD1-depleted human esophageal cancer cells.
Yang Z, Bu Y, Wang C, Liu G, Song F
Mol Cell Biochem. 2010
PubMed ID: 20364298
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Role of ATM and the damage response mediator proteins 53BP1 and MDC1 in the maintenance of G(2)/M checkpoint arrest.
Shibata A, Barton O, Noon AT, Dahm K, Deckbar D, Goodarzi AA, Löbrich M, Jeggo PA
Mol Cell Biol. 2010
PubMed ID: 20421415
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NFBD1/MDC1 participates in the regulation of G2/M transition in mammalian cells.
Bu Y, Suenaga Y, Okoshi R, Sang M, Kubo N, Song F, Nakagawara A, Ozaki T
Biochem Biophys Res Commun. 2010
PubMed ID: 20529673
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Wip1 directly dephosphorylates gamma-H2AX and attenuates the DNA damage response.
Cha H, Lowe JM, Li H, Lee JS, Belova GI, Bulavin DV, Fornace AJ
Cancer Res. 2010
PubMed ID: 20460517
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Radiation-induced survivin nuclear accumulation is linked to DNA damage repair.
Capalbo G, Dittmann K, Weiss C, Reichert S, Hausmann E, Rödel C, Rödel F
Int J Radiat Oncol Biol Phys. 2010
PubMed ID: 20394854
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CK2 phosphorylation-dependent interaction between aprataxin and MDC1 in the DNA damage response.
Becherel OJ, Jakob B, Cherry AL, Gueven N, Fusser M, Kijas AW, Peng C, Katyal S, McKinnon PJ, Chen J, Epe B, Smerdon SJ, Taucher-Scholz G, Lavin MF
Nucleic Acids Res. 2010
PubMed ID: 20008512
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Comparison of the structures and peptide binding specificities of the BRCT domains of MDC1 and BRCA1.
Campbell SJ, Edwards RA, Glover JN
Structure. 2010
PubMed ID: 20159462
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53BP1-dependent robust localized KAP-1 phosphorylation is essential for heterochromatic DNA double-strand break repair.
Noon AT, Shibata A, Rief N, Löbrich M, Stewart GS, Jeggo PA, Goodarzi AA
Nat Cell Biol. 2010
PubMed ID: 20081839
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Mediator of DNA damage checkpoint 1 (MDC1) regulates mitotic progression.
Townsend K, Mason H, Blackford AN, Miller ES, Chapman JR, Sedgwick GG, Barone G, Turnell AS, Stewart GS
J Biol Chem. 2009
PubMed ID: 19826003
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A supramodular FHA/BRCT-repeat architecture mediates Nbs1 adaptor function in response to DNA damage.
Lloyd J, Chapman JR, Clapperton JA, Haire LF, Hartsuiker E, Li J, Carr AM, Jackson SP, Smerdon SJ
Cell. 2009
PubMed ID: 19804756
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High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions.
Barcellos LF, May SL, Ramsay PP, Quach HL, Lane JA, Nititham J, Noble JA, Taylor KE, Quach DL, Chung SA, Kelly JA, Moser KL, Behrens TW, Seldin MF, Thomson G, Harley JB, Gaffney PM, Criswell LA
PLoS Genet. 2009
PubMed ID: 19851445
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Nucleotide excision repair-induced H2A ubiquitination is dependent on MDC1 and RNF8 and reveals a universal DNA damage response.
Marteijn JA, Bekker-Jensen S, Mailand N, Lans H, Schwertman P, Gourdin AM, Dantuma NP, Lukas J, Vermeulen W
J Cell Biol. 2009
PubMed ID: 19797077
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Polymorphic variants in hereditary pancreatic cancer genes are not associated with pancreatic cancer risk.
McWilliams RR, Bamlet WR, de Andrade M, Rider DN, Couch FJ, Cunningham JM, Matsumoto ME, Rabe KG, Hammer TJ, Petersen GM
Cancer Epidemiol Biomarkers Prev. 2009
PubMed ID: 19690177
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Lysine acetylation targets protein complexes and co-regulates major cellular functions.
Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, Walther TC, Olsen JV, Mann M
Science. 2009
PubMed ID: 19608861
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Sequence variant discovery in DNA repair genes from radiosensitive and radiotolerant prostate brachytherapy patients.
Pugh TJ, Keyes M, Barclay L, Delaney A, Krzywinski M, Thomas D, Novik K, Yang C, Agranovich A, McKenzie M, Morris WJ, Olive PL, Marra MA, Moore RA
Clin Cancer Res. 2009
PubMed ID: 19638463
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Formation of dynamic gamma-H2AX domains along broken DNA strands is distinctly regulated by ATM and MDC1 and dependent upon H2AX densities in chromatin.
Savic V, Yin B, Maas NL, Bredemeyer AL, Carpenter AC, Helmink BA, Yang-Iott KS, Sleckman BP, Bassing CH
Mol Cell. 2009
PubMed ID: 19450528
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Lineage-specific biology revealed by a finished genome assembly of the mouse.
Church DM, Goodstadt L, Hillier LW, Zody MC, Goldstein S, She X, Bult CJ, Agarwala R, Cherry JL, DiCuccio M, Hlavina W, Kapustin Y, Meric P, Maglott D, Birtle Z, Marques AC, Graves T, Zhou S, Teague B, Potamousis K, Churas C, Place M, Herschleb J, Runnheim R, Forrest D, Amos-Landgraf J, Schwartz DC, Cheng Z, Lindblad-Toh K, Eichler EE, Ponting CP, Mouse Genome Sequencing Consortium
PLoS Biol. 2009
PubMed ID: 19468303
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Direct binding of CoREST1 to SUMO-2/3 contributes to gene-specific repression by the LSD1/CoREST1/HDAC complex.
Ouyang J, Shi Y, Valin A, Xuan Y, Gill G
Mol Cell. 2009
PubMed ID: 19394292
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The direct interaction between 53BP1 and MDC1 is required for the recruitment of 53BP1 to sites of damage.
Eliezer Y, Argaman L, Rhie A, Doherty AJ, Goldberg M
J Biol Chem. 2009
PubMed ID: 18986980
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Barrier-to-autointegration factor proteome reveals chromatin-regulatory partners.
Montes de Oca R, Shoemaker CJ, Gucek M, Cole RN, Wilson KL
PLoS One. 2009
PubMed ID: 19759913
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Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions.
Mayya V, Lundgren DH, Hwang SI, Rezaul K, Wu L, Eng JK, Rodionov V, Han DK
Sci Signal. 2009
PubMed ID: 19690332
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Genetic variants in apoptosis and immunoregulation-related genes are associated with risk of chronic lymphocytic leukemia.
Enjuanes A, Benavente Y, Bosch F, Martín-Guerrero I, Colomer D, Pérez-Alvarez S, Reina O, Ardanaz MT, Jares P, García-Orad A, Pujana MA, Montserrat E, de Sanjosé S, Campo E
Cancer Res. 2008
PubMed ID: 19074885
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Evaluation of the low-specificity protease elastase for large-scale phosphoproteome analysis.
Wang B, Malik R, Nigg EA, Körner R
Anal Chem. 2008
PubMed ID: 19007248
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NFBD1/MDC1, 53BP1 and BRCA1 have both redundant and unique roles in the ATM pathway.
Wilson KA, Stern DF
Cell Cycle. 2008
PubMed ID: 19001859
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Disassembly of MDC1 foci is controlled by ubiquitin-proteasome-dependent degradation.
Shi W, Ma Z, Willers H, Akhtar K, Scott SP, Zhang J, Powell S, Zhang J
J Biol Chem. 2008
PubMed ID: 18757370
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Replication independent ATR signalling leads to G2/M arrest requiring Nbs1, 53BP1 and MDC1.
Stiff T, Cerosaletti K, Concannon P, O'Driscoll M, Jeggo PA
Hum Mol Genet. 2008
PubMed ID: 18664457
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Large-scale gene trapping in C57BL/6N mouse embryonic stem cells.
Hansen GM, Markesich DC, Burnett MB, Zhu Q, Dionne KM, Richter LJ, Finnell RH, Sands AT, Zambrowicz BP, Abuin A
Genome Res. 2008
PubMed ID: 18799693
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Structure of a second BRCT domain identified in the nijmegen breakage syndrome protein Nbs1 and its function in an MDC1-dependent localization of Nbs1 to DNA damage sites.
Xu C, Wu L, Cui G, Botuyan MV, Chen J, Mer G
J Mol Biol. 2008
PubMed ID: 18582474
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MDC1 regulates intra-S-phase checkpoint by targeting NBS1 to DNA double-strand breaks.
Wu L, Luo K, Lou Z, Chen J
Proc Natl Acad Sci U S A. 2008
PubMed ID: 18678890
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A quantitative atlas of mitotic phosphorylation.
Dephoure N, Zhou C, Villén J, Beausoleil SA, Bakalarski CE, Elledge SJ, Gygi SP
Proc Natl Acad Sci U S A. 2008
PubMed ID: 18669648
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Phospho-dependent interactions between NBS1 and MDC1 mediate chromatin retention of the MRN complex at sites of DNA damage.
Chapman JR, Jackson SP
EMBO Rep. 2008
PubMed ID: 18583988
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Differential regulation of centrosome integrity by DNA damage response proteins.
Rai R, Phadnis A, Haralkar S, Badwe RA, Dai H, Li K, Lin SY
Cell Cycle. 2008
PubMed ID: 18635967
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NFBD1/MDC1 stabilizes oncogenic MDM2 to contribute to cell fate determination in response to DNA damage.
Inoue K, Nakanjishi M, Kikuchi H, Yamamoto H, Todo S, Nakagawara A, Ozaki T
Biochem Biophys Res Commun. 2008
PubMed ID: 18471438
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Distinct versus overlapping functions of MDC1 and 53BP1 in DNA damage response and tumorigenesis.
Minter-Dykhouse K, Ward I, Huen MS, Chen J, Lou Z
J Cell Biol. 2008
PubMed ID: 18504301
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Constitutive phosphorylation of MDC1 physically links the MRE11-RAD50-NBS1 complex to damaged chromatin.
Spycher C, Miller ES, Townsend K, Pavic L, Morrice NA, Janscak P, Stewart GS, Stucki M
J Cell Biol. 2008
PubMed ID: 18411308
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Phosphorylation of SDT repeats in the MDC1 N terminus triggers retention of NBS1 at the DNA damage-modified chromatin.
Melander F, Bekker-Jensen S, Falck J, Bartek J, Mailand N, Lukas J
J Cell Biol. 2008
PubMed ID: 18411307
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Cep164 is a mediator protein required for the maintenance of genomic stability through modulation of MDC1, RPA, and CHK1.
Sivasubramaniam S, Sun X, Pan YR, Wang S, Lee EY
Genes Dev. 2008
PubMed ID: 18283122
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Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis.
Cantin GT, Yi W, Lu B, Park SK, Xu T, Lee JD, Yates JR
J Proteome Res. 2008
PubMed ID: 18220336
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Toward a confocal subcellular atlas of the human proteome.
Barbe L, Lundberg E, Oksvold P, Stenius A, Lewin E, Björling E, Asplund A, Pontén F, Brismar H, Uhlén M, Andersson-Svahn H
Mol Cell Proteomics. 2008
PubMed ID: 18029348
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Automated phosphoproteome analysis for cultured cancer cells by two-dimensional nanoLC-MS using a calcined titania/C18 biphasic column.
Imami K, Sugiyama N, Kyono Y, Tomita M, Ishihama Y
Anal Sci. 2008
PubMed ID: 18187866
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Sp1-mediated transcriptional regulation of NFBD1/MDC1 plays a critical role in DNA damage response pathway.
Bu Y, Suenaga Y, Ono S, Koda T, Song F, Nakagawara A, Ozaki T
Genes Cells. 2008
PubMed ID: 18173747
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Distinct roles of chromatin-associated proteins MDC1 and 53BP1 in mammalian double-strand break repair.
Xie A, Hartlerode A, Stucki M, Odate S, Puget N, Kwok A, Nagaraju G, Yan C, Alt FW, Chen J, Jackson SP, Scully R
Mol Cell. 2007
PubMed ID: 18158901
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Changes in protein expression due to deleterious mutations in the FA/BRCA pathway.
Salles D, Cabral RE, Paixão JC, de Almeida CE, Seuánez HN, Cabral-Neto JB
Biochem Biophys Res Commun. 2007
PubMed ID: 17977515
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Orchestration of the DNA-damage response by the RNF8 ubiquitin ligase.
Kolas NK, Chapman JR, Nakada S, Ylanko J, Chahwan R, Sweeney FD, Panier S, Mendez M, Wildenhain J, Thomson TM, Pelletier L, Jackson SP, Durocher D
Science. 2007
PubMed ID: 18006705
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RNF8 transduces the DNA-damage signal via histone ubiquitylation and checkpoint protein assembly.
Huen MS, Grant R, Manke I, Minn K, Yu X, Yaffe MB, Chen J
Cell. 2007
PubMed ID: 18001825
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RNF8 ubiquitylates histones at DNA double-strand breaks and promotes assembly of repair proteins.
Mailand N, Bekker-Jensen S, Faustrup H, Melander F, Bartek J, Lukas C, Lukas J
Cell. 2007
PubMed ID: 18001824
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MCPH1 functions in an H2AX-dependent but MDC1-independent pathway in response to DNA damage.
Wood JL, Singh N, Mer G, Chen J
J Biol Chem. 2007
PubMed ID: 17925396
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DNA damage response mediators MDC1 and 53BP1: constitutive activation and aberrant loss in breast and lung cancer, but not in testicular germ cell tumours.
Bartkova J, Horejsí Z, Sehested M, Nesland JM, Rajpert-De Meyts E, Skakkebaek NE, Stucki M, Jackson S, Lukas J, Bartek J
Oncogene. 2007
PubMed ID: 17546051
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The DNA damage response mediator MDC1 directly interacts with the anaphase-promoting complex/cyclosome.
Coster G, Hayouka Z, Argaman L, Strauss C, Friedler A, Brandeis M, Goldberg M
J Biol Chem. 2007
PubMed ID: 17827148
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Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra.
Yu LR, Zhu Z, Chan KC, Issaq HJ, Dimitrov DS, Veenstra TD
J Proteome Res. 2007
PubMed ID: 17924679
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Quantitative phosphoproteome profiling of Wnt3a-mediated signaling network: indicating the involvement of ribonucleoside-diphosphate reductase M2 subunit phosphorylation at residue serine 20 in canonical Wnt signal transduction.
Tang LY, Deng N, Wang LS, Dai J, Wang ZL, Jiang XS, Li SJ, Li L, Sheng QH, Wu DQ, Li L, Zeng R
Mol Cell Proteomics. 2007
PubMed ID: 17693683
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EUCOMM--the European conditional mouse mutagenesis program.
Friedel RH, Seisenberger C, Kaloff C, Wurst W
Brief Funct Genomic Proteomic. 2007
PubMed ID: 17967808
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[Expression of DNA damage checkpoint mediator 1 and p53-binding protein 1 in human esophageal cancer cell lines TE-1, TE-13, and Eca109]
Liu ZK, Zhu SC, Wang YX
Nan Fang Yi Ke Da Xue Xue Bao. 2007
PubMed ID: 17884766
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The interactome of the histone gene regulatory factor HiNF-P suggests novel cell cycle related roles in transcriptional control and RNA processing.
Miele A, Medina R, van Wijnen AJ, Stein GS, Stein JL
J Cell Biochem. 2007
PubMed ID: 17577209
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NFBD1/MDC1 associates with p53 and regulates its function at the crossroad between cell survival and death in response to DNA damage.
Nakanishi M, Ozaki T, Yamamoto H, Hanamoto T, Kikuchi H, Furuya K, Asaka M, Delia D, Nakagawara A
J Biol Chem. 2007
PubMed ID: 17535811
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Toward simpler and faster genome-wide mutagenesis in mice.
Wu S, Ying G, Wu Q, Capecchi MR
Nat Genet. 2007
PubMed ID: 17572674
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ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage.
Matsuoka S, Ballif BA, Smogorzewska A, McDonald ER, Hurov KE, Luo J, Bakalarski CE, Zhao Z, Solimini N, Lerenthal Y, Shiloh Y, Gygi SP, Elledge SJ
Science. 2007
PubMed ID: 17525332
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Initiation and resolution of interhomolog connections: crossover and non-crossover sites along mouse synaptonemal complexes.
Moens PB, Marcon E, Shore JS, Kochakpour N, Spyropoulos B
J Cell Sci. 2007
PubMed ID: 17344431
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Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry.
Molina H, Horn DM, Tang N, Mathivanan S, Pandey A
Proc Natl Acad Sci U S A. 2007
PubMed ID: 17287340
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The full-ORF clone resource of the German cDNA Consortium.
Bechtel S, Rosenfelder H, Duda A, Schmidt CP, Ernst U, Wellenreuther R, Mehrle A, Schuster C, Bahr A, Blöcker H, Heubner D, Hoerlein A, Michel G, Wedler H, Köhrer K, Ottenwälder B, Poustka A, Wiemann S, Schupp I
BMC Genomics. 2007
PubMed ID: 17974005
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MDC1 accelerates nonhomologous end-joining of dysfunctional telomeres.
Dimitrova N, de Lange T
Genes Dev. 2006
PubMed ID: 17158742
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Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.
Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, Mann M
Cell. 2006
PubMed ID: 17081983
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A role for the deubiquitinating enzyme USP28 in control of the DNA-damage response.
Zhang D, Zaugg K, Mak TW, Elledge SJ
Cell. 2006
PubMed ID: 16901786
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BRIT1 regulates early DNA damage response, chromosomal integrity, and cancer.
Rai R, Dai H, Multani AS, Li K, Chin K, Gray J, Lahad JP, Liang J, Mills GB, Meric-Bernstam F, Lin SY
Cancer Cell. 2006
PubMed ID: 16872911
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Rapid evolution of major histocompatibility complex class I genes in primates generates new disease alleles in humans via hitchhiking diversity.
Shiina T, Ota M, Shimizu S, Katsuyama Y, Hashimoto N, Takasu M, Anzai T, Kulski JK, Kikkawa E, Naruse T, Kimura N, Yanagiya K, Watanabe A, Hosomichi K, Kohara S, Iwamoto C, Umehara Y, Meyer A, Wanner V, Sano K, Macquin C, Ikeo K, Tokunaga K, Gojobori T, Inoko H, Bahram S
Genetics. 2006
PubMed ID: 16702430
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BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system.
Magdaleno S, Jensen P, Brumwell CL, Seal A, Lehman K, Asbury A, Cheung T, Cornelius T, Batten DM, Eden C, Norland SM, Rice DS, Dosooye N, Shakya S, Mehta P, Curran T
PLoS Biol. 2006
PubMed ID: 16602821
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H2AX prevents DNA breaks from progressing to chromosome breaks and translocations.
Franco S, Gostissa M, Zha S, Lombard DB, Murphy MM, Zarrin AA, Yan C, Tepsuporn S, Morales JC, Adams MM, Lou Z, Bassing CH, Manis JP, Chen J, Carpenter PB, Alt FW
Mol Cell. 2006
PubMed ID: 16427010
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MDC1 maintains genomic stability by participating in the amplification of ATM-dependent DNA damage signals.
Lou Z, Minter-Dykhouse K, Franco S, Gostissa M, Rivera MA, Celeste A, Manis JP, van Deursen J, Nussenzweig A, Paull TT, Alt FW, Chen J
Mol Cell. 2006
PubMed ID: 16427009
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MDC1 directly binds phosphorylated histone H2AX to regulate cellular responses to DNA double-strand breaks.
Stucki M, Clapperton JA, Mohammad D, Yaffe MB, Smerdon SJ, Jackson SP
Cell. 2005
PubMed ID: 16377563
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MDC1 interacts with Rad51 and facilitates homologous recombination.
Zhang J, Ma Z, Treszezamsky A, Powell SN
Nat Struct Mol Biol. 2005
PubMed ID: 16186822
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Proteomic analysis of steady-state nuclear hormone receptor coactivator complexes.
Jung SY, Malovannaya A, Wei J, O'Malley BW, Qin J
Mol Endocrinol. 2005
PubMed ID: 16051665
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Structure of the BRCT repeat domain of MDC1 and its specificity for the free COOH-terminal end of the gamma-H2AX histone tail.
Lee MS, Edwards RA, Thede GL, Glover JN
J Biol Chem. 2005
PubMed ID: 16049003
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Antisense transcription in the mammalian transcriptome.
Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J, Mattick J, Hume DA, Lipovich L, Batalov S, Engström PG, Mizuno Y, Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z, Lenhard B, Wahlestedt C, RIKEN Genome Exploration Research Group, Genome Science Group (Genome Network Project Core Group), FANTOM Consortium
Science. 2005
PubMed ID: 16141073
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The transcriptional landscape of the mammalian genome.
Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R, Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T, Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M, Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M, Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A, Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L, Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L, Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K, Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R, Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V, Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL, Sandelin A, Schneider C, Schönbach C, Sekiguchi K, Semple CA, Seno S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D, Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y, Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM, Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T, Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H, Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K, Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y, Suzuki H, Kawai J, Hayashizaki Y, FANTOM Consortium, RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science. 2005
PubMed ID: 16141072
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Dynamic assembly and sustained retention of 53BP1 at the sites of DNA damage are controlled by Mdc1/NFBD1.
Bekker-Jensen S, Lukas C, Melander F, Bartek J, Lukas J
J Cell Biol. 2005
PubMed ID: 16009723
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NFBD1/Mdc1 mediates ATR-dependent DNA damage response.
Peng A, Chen PL
Cancer Res. 2005
PubMed ID: 15734998
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Specific association of mouse MDC1/NFBD1 with NBS1 at sites of DNA-damage.
Lee AC, Fernandez-Capetillo O, Pisupati V, Jackson SP, Nussenzweig A
Cell Cycle. 2005
PubMed ID: 15611643
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NIMA-related protein kinase 1 is involved early in the ionizing radiation-induced DNA damage response.
Polci R, Peng A, Chen PL, Riley DJ, Chen Y
Cancer Res. 2004
PubMed ID: 15604234
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MDC1 regulates DNA-PK autophosphorylation in response to DNA damage.
Lou Z, Chen BP, Asaithamby A, Minter-Dykhouse K, Chen DJ, Chen J
J Biol Chem. 2004
PubMed ID: 15377652
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The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
Gerhard DS, Wagner L, Feingold EA, Shenmen CM, Grouse LH, Schuler G, Klein SL, Old S, Rasooly R, Good P, Guyer M, Peck AM, Derge JG, Lipman D, Collins FS, Jang W, Sherry S, Feolo M, Misquitta L, Lee E, Rotmistrovsky K, Greenhut SF, Schaefer CF, Buetow K, Bonner TI, Haussler D, Kent J, Kiekhaus M, Furey T, Brent M, Prange C, Schreiber K, Shapiro N, Bhat NK, Hopkins RF, Hsie F, Driscoll T, Soares MB, Casavant TL, Scheetz TE, Brown-stein MJ, Usdin TB, Toshiyuki S, Carninci P, Piao Y, Dudekula DB, Ko MS, Kawakami K, Suzuki Y, Sugano S, Gruber CE, Smith MR, Simmons B, Moore T, Waterman R, Johnson SL, Ruan Y, Wei CL, Mathavan S, Gunaratne PH, Wu J, Garcia AM, Hulyk SW, Fuh E, Yuan Y, Sneed A, Kowis C, Hodgson A, Muzny DM, McPherson J, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madari A, Young AC, Wetherby KD, Granite SJ, Kwong PN, Brinkley CP, Pearson RL, Bouffard GG, Blakesly RW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Griffith M, Griffith OL, Krzywinski MI, Liao N, Morin R, Morrin R, Palmquist D, Petrescu AS, Skalska U, Smailus DE, Stott JM, Schnerch A, Schein JE, Jones SJ, Holt RA, Baross A, Marra MA, Clifton S, Makowski KA, Bosak S, Malek J, MGC Project Team
Genome Res. 2004
PubMed ID: 15489334
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Large-scale characterization of HeLa cell nuclear phosphoproteins.
Beausoleil SA, Jedrychowski M, Schwartz D, Elias JE, Villén J, Li J, Cohn MA, Cantley LC, Gygi SP
Proc Natl Acad Sci U S A. 2004
PubMed ID: 15302935
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MDC1/NFBD1: a key regulator of the DNA damage response in higher eukaryotes.
Stucki M, Jackson SP
DNA Repair (Amst). 2004
PubMed ID: 15279781
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Mdc1 couples DNA double-strand break recognition by Nbs1 with its H2AX-dependent chromatin retention.
Lukas C, Melander F, Stucki M, Falck J, Bekker-Jensen S, Goldberg M, Lerenthal Y, Jackson SP, Bartek J, Lukas J
EMBO J. 2004
PubMed ID: 15201865
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The genomic sequence and comparative analysis of the rat major histocompatibility complex.
Hurt P, Walter L, Sudbrak R, Klages S, Müller I, Shiina T, Inoko H, Lehrach H, Günther E, Reinhardt R, Himmelbauer H
Genome Res. 2004
PubMed ID: 15060004
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Genome sequence of the Brown Norway rat yields insights into mammalian evolution.
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Nature. 2004
PubMed ID: 15057822
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Phosphopeptide binding specificities of BRCA1 COOH-terminal (BRCT) domains.
Rodriguez M, Yu X, Chen J, Songyang Z
J Biol Chem. 2003
PubMed ID: 14578343
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53BP1 and NFBD1/MDC1-Nbs1 function in parallel interacting pathways activating ataxia-telangiectasia mutated (ATM) in response to DNA damage.
Mochan TA, Venere M, DiTullio RA, Halazonetis TD
Cancer Res. 2003
PubMed ID: 14695167
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Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention.
Zambrowicz BP, Abuin A, Ramirez-Solis R, Richter LJ, Piggott J, BeltrandelRio H, Buxton EC, Edwards J, Finch RA, Friddle CJ, Gupta A, Hansen G, Hu Y, Huang W, Jaing C, Key BW, Kipp P, Kohlhauff B, Ma ZQ, Markesich D, Payne R, Potter DG, Qian N, Shaw J, Schrick J, Shi ZZ, Sparks MJ, Van Sligtenhorst I, Vogel P, Walke W, Xu N, Zhu Q, Person C, Sands AT
Proc Natl Acad Sci U S A. 2003
PubMed ID: 14610273
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The DNA sequence and analysis of human chromosome 6.
Mungall AJ, Palmer SA, Sims SK, Edwards CA, Ashurst JL, Wilming L, Jones MC, Horton R, Hunt SE, Scott CE, Gilbert JG, Clamp ME, Bethel G, Milne S, Ainscough R, Almeida JP, Ambrose KD, Andrews TD, Ashwell RI, Babbage AK, Bagguley CL, Bailey J, Banerjee R, Barker DJ, Barlow KF, Bates K, Beare DM, Beasley H, Beasley O, Bird CP, Blakey S, Bray-Allen S, Brook J, Brown AJ, Brown JY, Burford DC, Burrill W, Burton J, Carder C, Carter NP, Chapman JC, Clark SY, Clark G, Clee CM, Clegg S, Cobley V, Collier RE, Collins JE, Colman LK, Corby NR, Coville GJ, Culley KM, Dhami P, Davies J, Dunn M, Earthrowl ME, Ellington AE, Evans KA, Faulkner L, Francis MD, Frankish A, Frankland J, French L, Garner P, Garnett J, Ghori MJ, Gilby LM, Gillson CJ, Glithero RJ, Grafham DV, Grant M, Gribble S, Griffiths C, Griffiths M, Hall R, Halls KS, Hammond S, Harley JL, Hart EA, Heath PD, Heathcott R, Holmes SJ, Howden PJ, Howe KL, Howell GR, Huckle E, Humphray SJ, Humphries MD, Hunt AR, Johnson CM, Joy AA, Kay M, Keenan SJ, Kimberley AM, King A, Laird GK, Langford C, Lawlor S, Leongamornlert DA, Leversha M, Lloyd CR, Lloyd DM, Loveland JE, Lovell J, Martin S, Mashreghi-Mohammadi M, Maslen GL, Matthews L, McCann OT, McLaren SJ, McLay K, McMurray A, Moore MJ, Mullikin JC, Niblett D, Nickerson T, Novik KL, Oliver K, Overton-Larty EK, Parker A, Patel R, Pearce AV, Peck AI, Phillimore B, Phillips S, Plumb RW, Porter KM, Ramsey Y, Ranby SA, Rice CM, Ross MT, Searle SM, Sehra HK, Sheridan E, Skuce CD, Smith S, Smith M, Spraggon L, Squares SL, Steward CA, Sycamore N, Tamlyn-Hall G, Tester J, Theaker AJ, Thomas DW, Thorpe A, Tracey A, Tromans A, Tubby B, Wall M, Wallis JM, West AP, White SS, Whitehead SL, Whittaker H, Wild A, Willey DJ, Wilmer TE, Wood JM, Wray PW, Wyatt JC, Young L, Younger RM, Bentley DR, Coulson A, Durbin R, Hubbard T, Sulston JE, Dunham I, Rogers J, Beck S
Nature. 2003
PubMed ID: 14574404
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NFBD1/MDC1 regulates ionizing radiation-induced focus formation by DNA checkpoint signaling and repair factors.
Xu X, Stern DF
FASEB J. 2003
PubMed ID: 14519663
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Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries.
Okazaki N, Kikuno R, Ohara R, Inamoto S, Koseki H, Hiraoka S, Saga Y, Nagase T, Ohara O, Koga H
DNA Res. 2003
PubMed ID: 14621295
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A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome.
Hansen J, Floss T, Van Sloun P, Füchtbauer EM, Vauti F, Arnold HH, Schnütgen F, Wurst W, von Melchner H, Ruiz P
Proc Natl Acad Sci U S A. 2003
PubMed ID: 12904583
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Mediator of DNA damage checkpoint protein 1 regulates BRCA1 localization and phosphorylation in DNA damage checkpoint control.
Lou Z, Chini CC, Minter-Dykhouse K, Chen J
J Biol Chem. 2003
PubMed ID: 12611903
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NFBD1, like 53BP1, is an early and redundant transducer mediating Chk2 phosphorylation in response to DNA damage.
Peng A, Chen PL
J Biol Chem. 2003
PubMed ID: 12551934
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NFBD1/KIAA0170 is a chromatin-associated protein involved in DNA damage signaling pathways.
Xu X, Stern DF
J Biol Chem. 2003
PubMed ID: 12499369
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MDC1 is a mediator of the mammalian DNA damage checkpoint.
Stewart GS, Wang B, Bignell CR, Taylor AM, Elledge SJ
Nature. 2003
PubMed ID: 12607005
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MDC1 is coupled to activated CHK2 in mammalian DNA damage response pathways.
Lou Z, Minter-Dykhouse K, Wu X, Chen J
Nature. 2003
PubMed ID: 12607004
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MDC1 is required for the intra-S-phase DNA damage checkpoint.
Goldberg M, Stucki M, Falck J, D'Amours D, Rahman D, Pappin D, Bartek J, Jackson SP
Nature. 2003
PubMed ID: 12607003
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NFBD1, a novel nuclear protein with signature motifs of FHA and BRCT, and an internal 41-amino acid repeat sequence, is an early participant in DNA damage response.
Shang YL, Bodero AJ, Chen PL
J Biol Chem. 2003
PubMed ID: 12475977
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DNA damage activates ATM through intermolecular autophosphorylation and dimer dissociation.
Bakkenist CJ, Kastan MB
Nature. 2003
PubMed ID: 12556884
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BayGenomics: a resource of insertional mutations in mouse embryonic stem cells.
Stryke D, Kawamoto M, Huang CC, Johns SJ, King LA, Harper CA, Meng EC, Lee RE, Yee A, L'Italien L, Chuang PT, Young SG, Skarnes WC, Babbitt PC, Ferrin TE
Nucleic Acids Res. 2003
PubMed ID: 12520002
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Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.
Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T, Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P, Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH, Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW, Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW, Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U, Smailus DE, Schnerch A, Schein JE, Jones SJ, Marra MA, Mammalian Gene Collection Program Team
Proc Natl Acad Sci U S A. 2002
PubMed ID: 12477932
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Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
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Nature. 2002
PubMed ID: 12466851
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Functional annotation of a full-length mouse cDNA collection.
Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y, Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T, Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K, Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W, Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F, Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M, Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N, Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C, Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA, Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J, Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto N, Sasaki H, Sato K, Schönbach C, Seya T, Shibata Y, Storch KF, Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L, Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S, Hayashizaki Y, RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature. 2001
PubMed ID: 11217851
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RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer.
Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K, Togawa Y
Genome Res. 2000
PubMed ID: 11076861
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Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes.
Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M, Konno H, Okazaki Y, Muramatsu M, Hayashizaki Y
Genome Res. 2000
PubMed ID: 11042159
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NFBD1/KIAA0170 is a novel nuclear transcriptional transactivator with BRCT domain.
Ozaki T, Nagase T, Ichimiya S, Seki N, Ohiri M, Nomura N, Takada N, Sakiyama S, Weber BL, Nakagawara A
DNA Cell Biol. 2000
PubMed ID: 10975465
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High-efficiency full-length cDNA cloning.
Carninci P, Hayashizaki Y
Methods Enzymol. 1999
PubMed ID: 10349636
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Prediction of the coding sequences of unidentified human genes. V. The coding sequences of 40 new genes (KIAA0161-KIAA0200) deduced by analysis of cDNA clones from human cell line KG-1.
Nagase T, Seki N, Ishikawa K, Tanaka A, Nomura N
DNA Res. 1996
PubMed ID: 8724849
Model Organism Phenotype Links
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This section provides links to model organism phenotype resources. Currently only to mouse phenotypes.
External resources (dkCOIN) from NIDDK Consortium Interconnectivity Network
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Relevant resources: