MTA2
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Other Regions: 1 Available
| Locus | Species | Chromosomal Location | Mb | Number of genes |
|---|---|---|---|---|
| Iddm25 | Rat | chr1:193831373..230411453 | 36.58 | 585 |
(Human) GRCh37 - chr11:62360675..62369312 (8.64 kb) View in Genome Browser
(Mouse) NCBIM37 - chr19:9016365..9026793 (10.43 kb) View in Genome Browser
(Rat) RGSC3.4 - chr1:211618426..211627147 (8.72 kb) View in Genome Browser
HaemAtlas Expression Table for MTA2:
Expression Legend
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Cell Types Showing Expression: Available
Users should be aware that the scale represents a rank within an experiment rather than a normalized expression signal.
| Human | Mouse | Rat | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ductal cells | exocrine pancreas | pancreatic islets | primary beta cells | Pancreatic Islets MPSS | beta cell line | pancreatic islets | whole pancreas | alpha cell | beta cell line | pancreatic islets | primary beta cells | whole pancreas |
Expression Legend
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The Beta Cell Gene Atlas is a collection of almost all available public microarray data generated with pancreatic beta cells and related cell lines and types. The expression data comes from 131 array analyses derived from 28 experiments (open details in a new window). The basal (untreated cell) expression signal intensity values in each array were converted to ranks within the experiments; the highest value was used for genes represented by more than one probe. The rank values of genes in a given cell type were averaged with other calculated values from experiments performed with the same cell type. The rank transformation of the expression values enable comparison of gene expression across different organisms and tissues.
A red border around a cell indicates greater certainty in the data; specifically, the gene has >0.95 probability of being expressed in the tissue.
Tissues Showing Expression: Available
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Expression Legend
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| Signal intensity values were converted to ranks within the experiments. For genes represented by more than one probeset, we averaged the intensity signals for each probeset across all tissues and chose the probeset with the highest average value. The rank transformation of the expression values enables comparison of gene expression across different organisms and tissues. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Interactions Table for MTA2:The MTA2 interactions are shown below. Each row lists the two interactors, the sources which document this as an interaction, a classification of the interaction as empirical or predicted, and Pubmed IDs (if any) for the interaction.
The table of interactions is downloadable as a text file. Please note that the text file will not include data from HPRD due to restrictions imposed by the HPRD funding sources.
| Interactor | Interactor | Sources | Classification | Pubmed IDs |
| MTA2 | HDAC5 | BioGRID | empirical | 21081666 |
| MTA2 | CHD3 | IntAct, BioGRID | empirical | 19703393 10444591 11297506 |
| MTA2 | CHD4 | BioGRID | empirical | 12920132 20362541 15920471 9790534 19703393 |
| MTA2 | PARK7 | IntAct, BioGRID | empirical | 20127688 |
| MTA2 | MBD3L2 | BioGRID | empirical | 15701600 |
| MTA2 | ZFPM1 | BioGRID | empirical | 19654328 |
| MTA2 | TSC22D3 | IntAct | empirical | 21988832 |
| MTA2 | ESR1 | MINT, BioGRID | empirical | 18451880 16645043 |
| MTA2 | ESR2 | IntAct | empirical | 21182203 |
| MTA2 | ESRRB | BioGRID | empirical | 20362541 |
| MTA2 | FKBP3 | BioGRID | empirical | 12920132 |
| MTA2 | SPEN | HPRD | empirical | 11331609 |
| MTA2 | KDM1A | IntAct, BioGRID | empirical | 19703393 |
| MTA2 | SATB2 | BioGRID | empirical | 18333962 |
| MTA2 | ZFPM2 | BioGRID | empirical | 18067919 |
| MTA2 | SRRM2 | BioGRID | empirical | 16159877 |
| MTA2 | ZNF521 | BioGRID | empirical | 21173110 |
| MTA2 | SIN3A | BioGRID | empirical | 12920132 11602581 |
| MTA2 | APPL1 | HPRD, IntAct, BioGRID | empirical | 15016378 19686092 |
| MTA2 | GATA1 | BioGRID | empirical | 15920471 |
| MTA2 | GBAS | IntAct, BioGRID | empirical | 20562859 |
| MTA2 | GTF2E2 | BioGRID | empirical | 17643375 |
| MTA2 | TFCP2L1 | BioGRID | empirical | 20362541 |
| MTA2 | HDAC1 | IntAct, BioGRID | empirical | 19703393 20127688 21258344 14645126 12920132 11171972 10444591 12374985 19686092 16645043 15920471 11602581 11297506 11102443 9790534 20585571 |
| MTA2 | HDAC2 | IntAct, BioGRID | empirical | 19703393 21258344 12920132 12493763 10444591 19686092 18454139 15920471 11297506 11102443 |
| MTA2 | NR4A1 | BioGRID | empirical | 19321449 |
| MTA2 | HNRNPD | BioGRID | empirical | 18413351 |
| MTA2 | PCNT | BioGRID | empirical | 17626165 |
| MTA2 | BCL11A | BioGRID | empirical | 16091750 |
| MTA2 | MBD3 | HPRD, IntAct, BioGRID | empirical | 12124384 18500823 19703393 12354758 10444591 20362541 18454139 15920471 11297506 |
| MTA2 | ATR | BioGRID | empirical | 10545197 |
| MTA2 | POU5F1 | IntAct, BioGRID | empirical | 20362542 20362541 18454139 |
| MTA2 | APPL2 | HPRD, IntAct, BioGRID | empirical | 15016378 |
| MTA2 | CHD7 | BioGRID | empirical | 21532573 |
| MTA2 | SMARCAD1 | BioGRID | empirical | 21549307 |
| MTA2 | SALL4 | BioGRID | empirical | 20362541 |
| MTA2 | GATAD2B | BioGRID | empirical | 11756549 |
| MTA2 | MTA3 | IntAct | empirical | 21258344 |
| MTA2 | RBBP4 | HPRD, IntAct, BioGRID | empirical | 14645126 19703393 12920132 10444591 19686092 15920471 11602581 11297506 |
| MTA2 | RBBP7 | HPRD, IntAct, BioGRID | empirical | 14645126 19703393 12920132 10444591 18454139 15920471 11297506 |
| MTA2 | SATB1 | HPRD, BioGRID | empirical | 12374985 |
| MTA2 | SOX2 | BioGRID | empirical | 21532573 |
| MTA2 | BRCA1 | BioGRID | empirical | 19703393 |
| MTA2 | BRCA2 | IntAct | empirical | 19703393 |
| MTA2 | TOP2B | BioGRID | empirical | 11062478 |
| MTA2 | TP53 | HPRD, BioGRID | empirical | 11099047 12920132 |
| MTA2 | UBC | BioGRID | empirical | 20639865 18781797 21139048 21890473 21906983 |
| MTA2 | YY1 | BioGRID | empirical | 12920132 |
| MTA2 | NANOG | BioGRID | empirical | 18454139 |
| MTA2 | HIST1H3A | BioGRID | empirical | 11850410 |
| MTA2 | MBD3L1 | BioGRID | empirical | 15456747 |
| MTA2 | SAP30 | BioGRID | empirical | 10444591 |
| MTA2 | MBD2 | BioGRID | empirical | 10444591 15920471 11297506 11102443 |
| MTA2 | MED30 | BioGRID | empirical | 20211142 |
| MTA2 | MTA1 | BioGRID | empirical | 12920132 20362541 18454139 |
| MTA2 | MTA2 | BioGRID | empirical | 12920132 18454139 15920471 |
| MTA2 | UBE3C | IntAct | empirical | 21988832 |
| MTA2 | ULK2 | IntAct | empirical | 20562859 |
| MTA2 | ZEB2 | BioGRID | empirical | 18182442 |
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Publications: 98
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A conditional knockout resource for the genome-wide study of mouse gene function.
Skarnes WC, Rosen B, West AP, Koutsourakis M, Bushell W, Iyer V, Mujica AO, Thomas M, Harrow J, Cox T, Jackson D, Severin J, Biggs P, Fu J, Nefedov M, de Jong PJ, Stewart AF, Bradley A
Nature. 2011
PubMed ID: 21677750
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Nuclear import of histone deacetylase 5 by requisite nuclear localization signal phosphorylation.
Greco TM, Yu F, Guise AJ, Cristea IM
Mol Cell Proteomics. 2011
PubMed ID: 21081666
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Initial characterization of the human central proteome.
Burkard TR, Planyavsky M, Kaupe I, Breitwieser FP, Bürckstümmer T, Bennett KL, Superti-Furga G, Colinge J
BMC Syst Biol. 2011
PubMed ID: 21269460
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Zfp521 controls bone mass by HDAC3-dependent attenuation of Runx2 activity.
Hesse E, Saito H, Kiviranta R, Correa D, Yamana K, Neff L, Toben D, Duda G, Atfi A, Geoffroy V, Horne WC, Baron R
J Cell Biol. 2010
PubMed ID: 21173110
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Metastasis Tumor Antigen 2 (MTA2) is involved in proper imprinted expression of H19 and Peg3 during mouse preimplantation development.
Ma P, Lin S, Bartolomei MS, Schultz RM
Biol Reprod. 2010
PubMed ID: 20720167
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GATA-binding protein-3 regulates T helper type 2 cytokine and ifng loci through interaction with metastasis-associated protein 2.
Hwang SS, Lee S, Lee W, Lee GR
Immunology. 2010
PubMed ID: 20636338
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[Expression and significance of MTA2 in non-small cell lung cancer].
Wang S, Qi Y, Zhang J, Zhang Q, Li H, Qiu X
Zhongguo Fei Ai Za Zhi. 2010
PubMed ID: 20704817
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Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling.
Xu G, Paige JS, Jaffrey SR
Nat Biotechnol. 2010
PubMed ID: 20639865
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Network organization of the human autophagy system.
Behrends C, Sowa ME, Gygi SP, Harper JW
Nature. 2010
PubMed ID: 20562859
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Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst.
Guo G, Huss M, Tong GQ, Wang C, Li Sun L, Clarke ND, Robson P
Dev Cell. 2010
PubMed ID: 20412781
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An expanded Oct4 interaction network: implications for stem cell biology, development, and disease.
Pardo M, Lang B, Yu L, Prosser H, Bradley A, Babu MM, Choudhary J
Cell Stem Cell. 2010
PubMed ID: 20362542
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An Oct4-centered protein interaction network in embryonic stem cells.
van den Berg DL, Snoek T, Mullin NP, Yates A, Bezstarosti K, Demmers J, Chambers I, Poot RA
Cell Stem Cell. 2010
PubMed ID: 20362541
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Increased interaction between DJ-1 and the Mi-2/ nucleosome remodelling and deacetylase complex during cellular stress.
Opsahl JA, Hjørnevik LV, Bull VH, Fismen L, Frøyset AK, Gromyko D, Solstad T, Fladmark KE
Proteomics. 2010
PubMed ID: 20127688
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An atlas of combinatorial transcriptional regulation in mouse and man.
Ravasi T, Suzuki H, Cannistraci CV, Katayama S, Bajic VB, Tan K, Akalin A, Schmeier S, Kanamori-Katayama M, Bertin N, Carninci P, Daub CO, Forrest AR, Gough J, Grimmond S, Han JH, Hashimoto T, Hide W, Hofmann O, Kamburov A, Kaur M, Kawaji H, Kubosaki A, Lassmann T, van Nimwegen E, MacPherson CR, Ogawa C, Radovanovic A, Schwartz A, Teasdale RD, Tegnér J, Lenhard B, Teichmann SA, Arakawa T, Ninomiya N, Murakami K, Tagami M, Fukuda S, Imamura K, Kai C, Ishihara R, Kitazume Y, Kawai J, Hume DA, Ideker T, Hayashizaki Y
Cell. 2010
PubMed ID: 20211142
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Human cytomegalovirus UL29/28 protein interacts with components of the NuRD complex which promote accumulation of immediate-early RNA.
Terhune SS, Moorman NJ, Cristea IM, Savaryn JP, Cuevas-Bennett C, Rout MP, Chait BT, Shenk T
PLoS Pathog. 2010
PubMed ID: 20585571
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A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58.
Yokoyama S, Ito Y, Ueno-Kudoh H, Shimizu H, Uchibe K, Albini S, Mitsuoka K, Miyaki S, Kiso M, Nagai A, Hikata T, Osada T, Fukuda N, Yamashita S, Harada D, Mezzano V, Kasai M, Puri PL, Hayashizaki Y, Okado H, Hashimoto M, Asahara H
Dev Cell. 2009
PubMed ID: 20059953
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Functional characterization of the interactions between endosomal adaptor protein APPL1 and the NuRD co-repressor complex.
Banach-Orlowska M, Pilecka I, Torun A, Pyrzynska B, Miaczynska M
Biochem J. 2009
PubMed ID: 19686092
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Translational isoforms of FOG1 regulate GATA1-interacting complexes.
Snow JW, Orkin SH
J Biol Chem. 2009
PubMed ID: 19654328
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ZIP: a novel transcription repressor, represses EGFR oncogene and suppresses breast carcinogenesis.
Li R, Zhang H, Yu W, Chen Y, Gui B, Liang J, Wang Y, Sun L, Yang X, Zhang Y, Shi L, Li Y, Shang Y
EMBO J. 2009
PubMed ID: 19644445
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LSD1 is a subunit of the NuRD complex and targets the metastasis programs in breast cancer.
Wang Y, Zhang H, Chen Y, Sun Y, Yang F, Yu W, Liang J, Sun L, Yang X, Shi L, Li R, Li Y, Zhang Y, Li Q, Yi X, Shang Y
Cell. 2009
PubMed ID: 19703393
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Lysine acetylation targets protein complexes and co-regulates major cellular functions.
Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, Walther TC, Olsen JV, Mann M
Science. 2009
PubMed ID: 19608861
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Overexpression of metastasis-associated protein 2 is associated with hepatocellular carcinoma size and differentiation.
Lee H, Ryu SH, Hong SS, Seo DD, Min HJ, Jang MK, Kwon HJ, Yu E, Chung YH, Kim KW
J Gastroenterol Hepatol. 2009
PubMed ID: 19702911
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TIF1beta/KAP-1 is a coactivator of the orphan nuclear receptor NGFI-B/Nur77.
Rambaud J, Desroches J, Balsalobre A, Drouin J
J Biol Chem. 2009
PubMed ID: 19321449
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Direct binding of CoREST1 to SUMO-2/3 contributes to gene-specific repression by the LSD1/CoREST1/HDAC complex.
Ouyang J, Shi Y, Valin A, Xuan Y, Gill G
Mol Cell. 2009
PubMed ID: 19394292
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Barrier-to-autointegration factor proteome reveals chromatin-regulatory partners.
Montes de Oca R, Shoemaker CJ, Gucek M, Cole RN, Wilson KL
PLoS One. 2009
PubMed ID: 19759913
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Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions.
Mayya V, Lundgren DH, Hwang SI, Rezaul K, Wu L, Eng JK, Rodionov V, Han DK
Sci Signal. 2009
PubMed ID: 19690332
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In vitro nuclear interactome of the HIV-1 Tat protein.
Gautier VW, Gu L, O'Donoghue N, Pennington S, Sheehy N, Hall WW
Retrovirology. 2009
PubMed ID: 19454010
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Members of the NuRD chromatin remodeling complex interact with AUF1 in developing cortical neurons.
Lee C, Gyorgy A, Maric D, Sadri N, Schneider RJ, Barker JL, Lawson M, Agoston DV
Cereb Cortex. 2008
PubMed ID: 18413351
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Quantitative analysis of global ubiquitination in HeLa cells by mass spectrometry.
Meierhofer D, Wang X, Huang L, Kaiser P
J Proteome Res. 2008
PubMed ID: 18781797
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Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle.
Daub H, Olsen JV, Bairlein M, Gnad F, Oppermann FS, Körner R, Greff Z, Kéri G, Stemmann O, Mann M
Mol Cell. 2008
PubMed ID: 18691976
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A quantitative atlas of mitotic phosphorylation.
Dephoure N, Zhou C, Villén J, Beausoleil SA, Bakalarski CE, Elledge SJ, Gygi SP
Proc Natl Acad Sci U S A. 2008
PubMed ID: 18669648
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Nanog and Oct4 associate with unique transcriptional repression complexes in embryonic stem cells.
Liang J, Wan M, Zhang Y, Gu P, Xin H, Jung SY, Qin J, Wong J, Cooney AJ, Liu D, Songyang Z
Nat Cell Biol. 2008
PubMed ID: 18454139
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Switching of chromatin-remodelling complexes for oestrogen receptor-alpha.
Okada M, Takezawa S, Mezaki Y, Yamaoka I, Takada I, Kitagawa H, Kato S
EMBO Rep. 2008
PubMed ID: 18451880
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Inactivation of NuRD component Mta2 causes abnormal T cell activation and lupus-like autoimmune disease in mice.
Lu X, Kovalev GI, Chang H, Kallin E, Knudsen G, Xia L, Mishra N, Ruiz P, Li E, Su L, Zhang Y
J Biol Chem. 2008
PubMed ID: 18353770
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Atypical Mowat-Wilson patient confirms the importance of the novel association between ZFHX1B/SIP1 and NuRD corepressor complex.
Verstappen G, van Grunsven LA, Michiels C, Van de Putte T, Souopgui J, Van Damme J, Bellefroid E, Vandekerckhove J, Huylebroeck D
Hum Mol Genet. 2008
PubMed ID: 18182442
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GUDMAP: the genitourinary developmental molecular anatomy project.
McMahon AP, Aronow BJ, Davidson DR, Davies JA, Gaido KW, Grimmond S, Lessard JL, Little MH, Potter SS, Wilder EL, Zhang P, GUDMAP project
J Am Soc Nephrol. 2008
PubMed ID: 18287559
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Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis.
Cantin GT, Yi W, Lu B, Park SK, Xu T, Lee JD, Yates JR
J Proteome Res. 2008
PubMed ID: 18220336
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Toward a confocal subcellular atlas of the human proteome.
Barbe L, Lundberg E, Oksvold P, Stenius A, Lewin E, Björling E, Asplund A, Pontén F, Brismar H, Uhlén M, Andersson-Svahn H
Mol Cell Proteomics. 2008
PubMed ID: 18029348
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SATB2 interacts with chromatin-remodeling molecules in differentiating cortical neurons.
Gyorgy AB, Szemes M, de Juan Romero C, Tarabykin V, Agoston DV
Eur J Neurosci. 2008
PubMed ID: 18333962
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The zinc finger and C-terminal domains of MTA proteins are required for FOG-2-mediated transcriptional repression via the NuRD complex.
Roche AE, Bassett BJ, Samant SA, Hong W, Blobel GA, Svensson EC
J Mol Cell Cardiol. 2008
PubMed ID: 18067919
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Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra.
Yu LR, Zhu Z, Chan KC, Issaq HJ, Dimitrov DS, Veenstra TD
J Proteome Res. 2007
PubMed ID: 17924679
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Chromatin remodeling proteins interact with pericentrin to regulate centrosome integrity.
Sillibourne JE, Delaval B, Redick S, Sinha M, Doxsey SJ
Mol Biol Cell. 2007
PubMed ID: 17626165
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Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme.
Jeronimo C, Forget D, Bouchard A, Li Q, Chua G, Poitras C, Thérien C, Bergeron D, Bourassa S, Greenblatt J, Chabot B, Poirier GG, Hughes TR, Blanchette M, Price DH, Coulombe B
Mol Cell. 2007
PubMed ID: 17643375
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Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.
Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, Mann M
Cell. 2006
PubMed ID: 17081983
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Metastasis-associated protein 2 is a repressor of estrogen receptor alpha whose overexpression leads to estrogen-independent growth of human breast cancer cells.
Cui Y, Niu A, Pestell R, Kumar R, Curran EM, Liu Y, Fuqua SA
Mol Endocrinol. 2006
PubMed ID: 16645043
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Human chromosome 11 DNA sequence and analysis including novel gene identification.
Taylor TD, Noguchi H, Totoki Y, Toyoda A, Kuroki Y, Dewar K, Lloyd C, Itoh T, Takeda T, Kim DW, She X, Barlow KF, Bloom T, Bruford E, Chang JL, Cuomo CA, Eichler E, FitzGerald MG, Jaffe DB, LaButti K, Nicol R, Park HS, Seaman C, Sougnez C, Yang X, Zimmer AR, Zody MC, Birren BW, Nusbaum C, Fujiyama A, Hattori M, Rogers J, Lander ES, Sakaki Y
Nature. 2006
PubMed ID: 16554811
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The NuRD component Mbd3 is required for pluripotency of embryonic stem cells.
Kaji K, Caballero IM, MacLeod R, Nichols J, Wilson VA, Hendrich B
Nat Cell Biol. 2006
PubMed ID: 16462733
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Proteomic analysis of SRm160-containing complexes reveals a conserved association with cohesin.
McCracken S, Longman D, Marcon E, Moens P, Downey M, Nickerson JA, Jessberger R, Wilde A, Caceres JF, Emili A, Blencowe BJ
J Biol Chem. 2005
PubMed ID: 16159877
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BCL11B functionally associates with the NuRD complex in T lymphocytes to repress targeted promoter.
Cismasiu VB, Adamo K, Gecewicz J, Duque J, Lin Q, Avram D
Oncogene. 2005
PubMed ID: 16091750
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Antisense transcription in the mammalian transcriptome.
Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J, Mattick J, Hume DA, Lipovich L, Batalov S, Engström PG, Mizuno Y, Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z, Lenhard B, Wahlestedt C, RIKEN Genome Exploration Research Group, Genome Science Group (Genome Network Project Core Group), FANTOM Consortium
Science. 2005
PubMed ID: 16141073
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The transcriptional landscape of the mammalian genome.
Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R, Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T, Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M, Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M, Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A, Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L, Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L, Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K, Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R, Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V, Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL, Sandelin A, Schneider C, Schönbach C, Sekiguchi K, Semple CA, Seno S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D, Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y, Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM, Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T, Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H, Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K, Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y, Suzuki H, Kawai J, Hayashizaki Y, FANTOM Consortium, RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science. 2005
PubMed ID: 16141072
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GATA-1 forms distinct activating and repressive complexes in erythroid cells.
Rodriguez P, Bonte E, Krijgsveld J, Kolodziej KE, Guyot B, Heck AJ, Vyas P, de Boer E, Grosveld F, Strouboulis J
EMBO J. 2005
PubMed ID: 15920471
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MBD3L2 interacts with MBD3 and components of the NuRD complex and can oppose MBD2-MeCP1-mediated methylation silencing.
Jin SG, Jiang CL, Rauch T, Li H, Pfeifer GP
J Biol Chem. 2005
PubMed ID: 15701600
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Gene and alternative splicing annotation with AIR.
Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M, Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail S, Li P, Sutton G
Genome Res. 2005
PubMed ID: 15632090
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Mouse brain organization revealed through direct genome-scale TF expression analysis.
Gray PA, Fu H, Luo P, Zhao Q, Yu J, Ferrari A, Tenzen T, Yuk DI, Tsung EF, Cai Z, Alberta JA, Cheng LP, Liu Y, Stenman JM, Valerius MT, Billings N, Kim HA, Greenberg ME, McMahon AP, Rowitch DH, Stiles CD, Ma Q
Science. 2004
PubMed ID: 15618518
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MBD3L1 is a transcriptional repressor that interacts with methyl-CpG-binding protein 2 (MBD2) and components of the NuRD complex.
Jiang CL, Jin SG, Pfeifer GP
J Biol Chem. 2004
PubMed ID: 15456747
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Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas.
Watahiki A, Waki K, Hayatsu N, Shiraki T, Kondo S, Nakamura M, Sasaki D, Arakawa T, Kawai J, Harbers M, Hayashizaki Y, Carninci P
Nat Methods. 2004
PubMed ID: 15782199
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The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
Gerhard DS, Wagner L, Feingold EA, Shenmen CM, Grouse LH, Schuler G, Klein SL, Old S, Rasooly R, Good P, Guyer M, Peck AM, Derge JG, Lipman D, Collins FS, Jang W, Sherry S, Feolo M, Misquitta L, Lee E, Rotmistrovsky K, Greenhut SF, Schaefer CF, Buetow K, Bonner TI, Haussler D, Kent J, Kiekhaus M, Furey T, Brent M, Prange C, Schreiber K, Shapiro N, Bhat NK, Hopkins RF, Hsie F, Driscoll T, Soares MB, Casavant TL, Scheetz TE, Brown-stein MJ, Usdin TB, Toshiyuki S, Carninci P, Piao Y, Dudekula DB, Ko MS, Kawakami K, Suzuki Y, Sugano S, Gruber CE, Smith MR, Simmons B, Moore T, Waterman R, Johnson SL, Ruan Y, Wei CL, Mathavan S, Gunaratne PH, Wu J, Garcia AM, Hulyk SW, Fuh E, Yuan Y, Sneed A, Kowis C, Hodgson A, Muzny DM, McPherson J, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madari A, Young AC, Wetherby KD, Granite SJ, Kwong PN, Brinkley CP, Pearson RL, Bouffard GG, Blakesly RW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Griffith M, Griffith OL, Krzywinski MI, Liao N, Morin R, Morrin R, Palmquist D, Petrescu AS, Skalska U, Smailus DE, Stott JM, Schnerch A, Schein JE, Jones SJ, Holt RA, Baross A, Marra MA, Clifton S, Makowski KA, Bosak S, Malek J, MGC Project Team
Genome Res. 2004
PubMed ID: 15489334
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Genomic analysis of mouse retinal development.
Blackshaw S, Harpavat S, Trimarchi J, Cai L, Huang H, Kuo WP, Weber G, Lee K, Fraioli RE, Cho SH, Yung R, Asch E, Ohno-Machado L, Wong WH, Cepko CL
PLoS Biol. 2004
PubMed ID: 15226823
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Genome sequence of the Brown Norway rat yields insights into mammalian evolution.
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Nature. 2004
PubMed ID: 15057822
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APPL proteins link Rab5 to nuclear signal transduction via an endosomal compartment.
Miaczynska M, Christoforidis S, Giner A, Shevchenko A, Uttenweiler-Joseph S, Habermann B, Wilm M, Parton RG, Zerial M
Cell. 2004
PubMed ID: 15016378
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Atrophin 2 recruits histone deacetylase and is required for the function of multiple signaling centers during mouse embryogenesis.
Zoltewicz JS, Stewart NJ, Leung R, Peterson AS
Development. 2004
PubMed ID: 14645126
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Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention.
Zambrowicz BP, Abuin A, Ramirez-Solis R, Richter LJ, Piggott J, BeltrandelRio H, Buxton EC, Edwards J, Finch RA, Friddle CJ, Gupta A, Hansen G, Hu Y, Huang W, Jaing C, Key BW, Kipp P, Kohlhauff B, Ma ZQ, Markesich D, Payne R, Potter DG, Qian N, Shaw J, Schrick J, Shi ZZ, Sparks MJ, Van Sligtenhorst I, Vogel P, Walke W, Xu N, Zhu Q, Person C, Sands AT
Proc Natl Acad Sci U S A. 2003
PubMed ID: 14610273
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The metastasis-associated proteins 1 and 2 form distinct protein complexes with histone deacetylase activity.
Yao YL, Yang WM
J Biol Chem. 2003
PubMed ID: 12920132
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MTA3, a Mi-2/NuRD complex subunit, regulates an invasive growth pathway in breast cancer.
Fujita N, Jaye DL, Kajita M, Geigerman C, Moreno CS, Wade PA
Cell. 2003
PubMed ID: 12705869
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A candidate X-linked mental retardation gene is a component of a new family of histone deacetylase-containing complexes.
Hakimi MA, Dong Y, Lane WS, Speicher DW, Shiekhattar R
J Biol Chem. 2003
PubMed ID: 12493763
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BayGenomics: a resource of insertional mutations in mouse embryonic stem cells.
Stryke D, Kawamoto M, Huang CC, Johns SJ, King LA, Harper CA, Meng EC, Lee RE, Yee A, L'Italien L, Chuang PT, Young SG, Skarnes WC, Babbitt PC, Ferrin TE
Nucleic Acids Res. 2003
PubMed ID: 12520002
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Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.
Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T, Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P, Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH, Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW, Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW, Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U, Smailus DE, Schnerch A, Schein JE, Jones SJ, Marra MA, Mammalian Gene Collection Program Team
Proc Natl Acad Sci U S A. 2002
PubMed ID: 12477932
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MBD3 and HDAC1, two components of the NuRD complex, are localized at Aurora-A-positive centrosomes in M phase.
Sakai H, Urano T, Ookata K, Kim MH, Hirai Y, Saito M, Nojima Y, Ishikawa F
J Biol Chem. 2002
PubMed ID: 12354758
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Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
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Nature. 2002
PubMed ID: 12466851
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SATB1 targets chromatin remodelling to regulate genes over long distances.
Yasui D, Miyano M, Cai S, Varga-Weisz P, Kohwi-Shigematsu T
Nature. 2002
PubMed ID: 12374985
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The mCpG-binding domain of human MBD3 does not bind to mCpG but interacts with NuRD/Mi2 components HDAC1 and MTA2.
Saito M, Ishikawa F
J Biol Chem. 2002
PubMed ID: 12124384
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Murine Sall1 represses transcription by recruiting a histone deacetylase complex.
Kiefer SM, McDill BW, Yang J, Rauchman M
J Biol Chem. 2002
PubMed ID: 11836251
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Set9, a novel histone H3 methyltransferase that facilitates transcription by precluding histone tail modifications required for heterochromatin formation.
Nishioka K, Chuikov S, Sarma K, Erdjument-Bromage H, Allis CD, Tempst P, Reinberg D
Genes Dev. 2002
PubMed ID: 11850410
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Identification and functional characterization of the p66/p68 components of the MeCP1 complex.
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Mol Cell Biol. 2002
PubMed ID: 11756549
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Histone deacetylase 1 phosphorylation promotes enzymatic activity and complex formation.
Pflum MK, Tong JK, Lane WS, Schreiber SL
J Biol Chem. 2001
PubMed ID: 11602581
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Characterization of mouse metastasis-associated gene 2: genomic structure, nuclear localization signal, and alternative potentials as transcriptional activator and repressor.
Matsusue K, Takiguchi S, Toh Y, Kono A
DNA Cell Biol. 2001
PubMed ID: 11749719
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Sp1 and ETS family transcription factors regulate the mouse Mta2 gene expression.
Xia L, Zhang Y
Gene. 2001
PubMed ID: 11368903
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Sharp, an inducible cofactor that integrates nuclear receptor repression and activation.
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The MeCP1 complex represses transcription through preferential binding, remodeling, and deacetylating methylated nucleosomes.
Feng Q, Zhang Y
Genes Dev. 2001
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Stable histone deacetylase complexes distinguished by the presence of SANT domain proteins CoREST/kiaa0071 and Mta-L1.
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CoREST is an integral component of the CoREST- human histone deacetylase complex.
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Proc Natl Acad Sci U S A. 2001
PubMed ID: 11171972
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Functional annotation of a full-length mouse cDNA collection.
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Nature. 2001
PubMed ID: 11217851
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Assignment of the metastasis-associated gene (Mta1) to mouse chromosome band 12F and the metastasis-associated gene 2 (Mta2) to mouse chromosome band 19B by fluorescence in situ hybridization.
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Cytogenet Cell Genet. 2001
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Deacetylation of p53 modulates its effect on cell growth and apoptosis.
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Nature. 2000
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RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer.
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Histone deacetylase interacts directly with DNA topoisomerase II.
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Nat Genet. 2000
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Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes.
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Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray.
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Biochemistry. 1999
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Mi-2 complex couples DNA methylation to chromatin remodelling and histone deacetylation.
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Nat Genet. 1999
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Molecular cloning, mapping, and characterization of a novel human gene, MTA1-L1, showing homology to a metastasis-associated gene, MTA1.
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Methods Enzymol. 1999
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Mol Cell. 1998
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The dermatomyositis-specific autoantigen Mi2 is a component of a complex containing histone deacetylase and nucleosome remodeling activities.
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