ACTL6A
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(Human) GRCh37 - chr3:179280668..179306196 (25.53 kb) View in Genome Browser
(Mouse) NCBIM37 - chr3:32607468..32625893 (18.43 kb) View in Genome Browser
(Rat) RGSC3.4 - chr2:118919542..118935591 (165 kb) View in Genome Browser
HaemAtlas Expression Table for ACTL6A:
Expression Legend
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Cell Types Showing Expression: Available
Users should be aware that the scale represents a rank within an experiment rather than a normalized expression signal.
| Human | Mouse | Rat | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ductal cells | exocrine pancreas | pancreatic islets | primary beta cells | Pancreatic Islets MPSS | beta cell line | pancreatic islets | whole pancreas | alpha cell | beta cell line | pancreatic islets | primary beta cells | whole pancreas |
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The Beta Cell Gene Atlas is a collection of almost all available public microarray data generated with pancreatic beta cells and related cell lines and types. The expression data comes from 131 array analyses derived from 28 experiments (open details in a new window). The basal (untreated cell) expression signal intensity values in each array were converted to ranks within the experiments; the highest value was used for genes represented by more than one probe. The rank values of genes in a given cell type were averaged with other calculated values from experiments performed with the same cell type. The rank transformation of the expression values enable comparison of gene expression across different organisms and tissues.
A red border around a cell indicates greater certainty in the data; specifically, the gene has >0.95 probability of being expressed in the tissue.
Tissues Showing Expression: Available
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| Signal intensity values were converted to ranks within the experiments. For genes represented by more than one probeset, we averaged the intensity signals for each probeset across all tissues and chose the probeset with the highest average value. The rank transformation of the expression values enables comparison of gene expression across different organisms and tissues. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Interactions Table for ACTL6A:The ACTL6A interactions are shown below. Each row lists the two interactors, the sources which document this as an interaction, a classification of the interaction as empirical or predicted, and Pubmed IDs (if any) for the interaction.
The table of interactions is downloadable as a text file. Please note that the text file will not include data from HPRD due to restrictions imposed by the HPRD funding sources.
| Interactor | Interactor | Sources | Classification | Pubmed IDs |
| ACTL6A | MCRS1 | IntAct, BioGRID | empirical | 16230350 17721549 |
| ACTL6A | ZNHIT1 | IntAct | empirical | 16230350 15647280 |
| ACTL6A | KAT5 | IntAct, BioGRID | empirical | 20946988 10966108 15647280 11839798 14966270 |
| ACTL6A | SRCAP | IntAct | empirical | 15647280 |
| ACTL6A | RUVBL2 | IntAct, BioGRID | empirical | 18026119 12963728 16230350 15647280 17643375 17721549 |
| ACTL6A | BRD8 | IntAct | empirical | 12963728 15647280 |
| ACTL6A | MORF4L1 | IntAct, BioGRID | empirical | 12963728 15647280 17573780 14966270 |
| ACTL6A | INO80C | IntAct, BioGRID | empirical | 16230350 17721549 |
| ACTL6A | MAP3K8 | IntAct | empirical | 14743216 |
| ACTL6A | EWSR1 | HPRD, MINT, IntAct, BioGRID | empirical | 16189514 |
| ACTL6A | FLII | HPRD | empirical | 14966289 |
| ACTL6A | CBX5 | IntAct | empirical | 20562864 |
| ACTL6A | EPC2 | IntAct | empirical | 15647280 |
| ACTL6A | KAT2A | BioGRID | empirical | 11839798 |
| ACTL6A | INO80E | IntAct, BioGRID | empirical | 21303910 18922472 16230350 17721549 |
| ACTL6A | TFCP2L1 | BioGRID | empirical | 20362541 |
| ACTL6A | TFPT | IntAct, BioGRID | empirical | 16230350 17721549 |
| ACTL6A | H2AFZ | BioGRID | empirical | 17721549 |
| ACTL6A | ING1 | BioGRID | empirical | 11784859 |
| ACTL6A | ING2 | BioGRID | empirical | 16387653 |
| ACTL6A | ARHGDIA | HPRD, MINT, IntAct, BioGRID | empirical | 16169070 |
| ACTL6A | MAX | IntAct | empirical | 20946988 |
| ACTL6A | MYC | HPRD, IntAct, BioGRID | empirical | 11839798 17314511 |
| ACTL6A | NFRKB | IntAct, BioGRID | empirical | 16230350 17721549 |
| ACTL6A | UCHL5 | IntAct | empirical | 18922472 |
| ACTL6A | TRIM33 | IntAct | empirical | 20603019 |
| ACTL6A | POLR2A | HPRD | empirical | 9710619 |
| ACTL6A | ING3 | IntAct | empirical | 15647280 |
| ACTL6A | POU5F1 | IntAct, BioGRID | empirical | 20362542 |
| ACTL6A | INO80 | IntAct, BioGRID | empirical | 18026119 16230350 21303910 |
| ACTL6A | INO80D | IntAct, BioGRID | empirical | 16230350 17721549 |
| ACTL6A | PBRM1 | IntAct, BioGRID | empirical | 11780067 15985610 |
| ACTL6A | C20orf20 | HPRD, IntAct, BioGRID | empirical | 12963728 16230350 15647280 17573780 |
| ACTL6A | DMAP1 | IntAct | empirical | 20946988 12963728 15647280 |
| ACTL6A | SMARCAD1 | BioGRID | empirical | 21549307 |
| ACTL6A | PLSCR4 | IntAct | empirical | 15647280 |
| ACTL6A | SALL4 | BioGRID | empirical | 20362541 |
| ACTL6A | EP400 | IntAct, BioGRID | empirical | 12963728 11509179 |
| ACTL6A | RELA | HPRD | empirical | 14743216 |
| ACTL6A | RELB | MINT, IntAct, BioGRID | empirical | 14743216 |
| ACTL6A | ACTR6 | IntAct | empirical | 15647280 |
| ACTL6A | MEAF6 | IntAct | empirical | 15647280 |
| ACTL6A | SMARCA2 | HPRD, BioGRID | empirical | 12437990 8895581 11839798 19279220 14559996 20460684 |
| ACTL6A | SMARCA4 | HPRD, IntAct, BioGRID | empirical | 9845365 15985610 11780067 8895581 19279220 14559996 20460684 |
| ACTL6A | SMARCB1 | IntAct, BioGRID | empirical | 11780067 8895581 |
| ACTL6A | SMARCC1 | IntAct | empirical | 11780067 |
| ACTL6A | SMARCC2 | IntAct | empirical | 11780067 |
| ACTL6A | SMARCD1 | IntAct | empirical | 11780067 |
| ACTL6A | SMARCD2 | IntAct | empirical | 11780067 |
| ACTL6A | SMARCE1 | IntAct, BioGRID | empirical | 11780067 9845365 18809673 |
| ACTL6A | SOX2 | BioGRID | empirical | 21532573 |
| ACTL6A | VPS72 | IntAct | empirical | 15647280 |
| ACTL6A | UBC | BioGRID | empirical | 16196087 21963094 21139048 21890473 21906983 |
| ACTL6A | YY1 | IntAct, BioGRID | empirical | 18026119 17721549 |
| ACTL6A | ACTR5 | IntAct, BioGRID | empirical | 16230350 17721549 |
| ACTL6A | EPC1 | IntAct | empirical | 15647280 |
| ACTL6A | YEATS4 | IntAct | empirical | 15647280 |
| ACTL6A | TRRAP | HPRD, IntAct, BioGRID | empirical | 11839798 12963728 |
| ACTL6A | INO80B | IntAct, BioGRID | empirical | 16230350 17721549 |
| ACTL6A | EAF1 | IntAct | empirical | 15647280 |
| ACTL6A | RUVBL1 | HPRD, IntAct, BioGRID | empirical | 11839798 12963728 16230350 15647280 17721549 |
| ACTL6A | BAZ1B | BioGRID | empirical | 12837248 |
| ACTL6A | BCL7C | BioGRID | empirical | 18809673 |
| ACTL6A | BCL7B | IntAct, BioGRID | empirical | 20360068 |
| ACTL6A | ACTR8 | IntAct, BioGRID | empirical | 16230350 17721549 |
| ACTL6A | MORF4L2 | IntAct, BioGRID | empirical | 12963728 15647280 17573780 |
| ACTL6A | KIAA0101 | BioGRID | empirical | 21628590 |
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Identification of transcripts with enriched expression in the developing and adult pancreas.
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J Biol Chem. 2010
PubMed ID: 20460684
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Cell Stem Cell. 2010
PubMed ID: 20362542
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Recruitment of the SWI/SNF chromatin remodeling complex to steroid hormone-regulated promoters by nuclear receptor coactivator flightless-I.
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PubMed ID: 19720835
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Regulation of muscle development by DPF3, a novel histone acetylation and methylation reader of the BAF chromatin remodeling complex.
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Association of BAF53 with mitotic chromosomes.
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Expansion of chromosome territories with chromatin decompaction in BAF53-depleted interphase cells.
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Mol Biol Cell. 2007
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YY1 functions with INO80 to activate transcription.
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Nat Struct Mol Biol. 2007
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Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme.
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Mol Cell. 2007
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An essential switch in subunit composition of a chromatin remodeling complex during neural development.
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RBP2 is an MRG15 complex component and down-regulates intragenic histone H3 lysine 4 methylation.
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Genes Cells. 2007
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hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes.
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Large-scale identification of c-MYC-associated proteins using a combined TAP/MudPIT approach.
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Cell Cycle. 2007
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The DNA sequence, annotation and analysis of human chromosome 3.
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BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system.
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PLoS Biol. 2006
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ING tumor suppressor proteins are critical regulators of chromatin acetylation required for genome expression and perpetuation.
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Mol Cell. 2006
PubMed ID: 16387653
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A mammalian chromatin remodeling complex with similarities to the yeast INO80 complex.
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PubMed ID: 16230350
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Large-scale analysis of the human ubiquitin-related proteome.
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Proteomics. 2005
PubMed ID: 16196087
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Towards a proteome-scale map of the human protein-protein interaction network.
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Nature. 2005
PubMed ID: 16189514
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A human protein-protein interaction network: a resource for annotating the proteome.
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Cell. 2005
PubMed ID: 16169070
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Antisense transcription in the mammalian transcriptome.
Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J, Mattick J, Hume DA, Lipovich L, Batalov S, Engström PG, Mizuno Y, Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z, Lenhard B, Wahlestedt C, RIKEN Genome Exploration Research Group, Genome Science Group (Genome Network Project Core Group), FANTOM Consortium
Science. 2005
PubMed ID: 16141073
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The transcriptional landscape of the mammalian genome.
Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R, Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T, Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M, Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M, Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A, Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L, Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L, Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K, Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R, Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V, Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL, Sandelin A, Schneider C, Schönbach C, Sekiguchi K, Semple CA, Seno S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D, Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y, Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM, Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T, Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H, Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K, Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y, Suzuki H, Kawai J, Hayashizaki Y, FANTOM Consortium, RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science. 2005
PubMed ID: 16141072
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PBAF chromatin-remodeling complex requires a novel specificity subunit, BAF200, to regulate expression of selective interferon-responsive genes.
Yan Z, Cui K, Murray DM, Ling C, Xue Y, Gerstein A, Parsons R, Zhao K, Wang W
Genes Dev. 2005
PubMed ID: 15985610
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The mammalian YL1 protein is a shared subunit of the TRRAP/TIP60 histone acetyltransferase and SRCAP complexes.
Cai Y, Jin J, Florens L, Swanson SK, Kusch T, Li B, Workman JL, Washburn MP, Conaway RC, Conaway JW
J Biol Chem. 2005
PubMed ID: 15647280
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Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas.
Watahiki A, Waki K, Hayatsu N, Shiraki T, Kondo S, Nakamura M, Sasaki D, Arakawa T, Kawai J, Harbers M, Hayashizaki Y, Carninci P
Nat Methods. 2004
PubMed ID: 15782199
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Baf60c is essential for function of BAF chromatin remodelling complexes in heart development.
Lickert H, Takeuchi JK, Von Both I, Walls JR, McAuliffe F, Adamson SL, Henkelman RM, Wrana JL, Rossant J, Bruneau BG
Nature. 2004
PubMed ID: 15525990
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The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
Gerhard DS, Wagner L, Feingold EA, Shenmen CM, Grouse LH, Schuler G, Klein SL, Old S, Rasooly R, Good P, Guyer M, Peck AM, Derge JG, Lipman D, Collins FS, Jang W, Sherry S, Feolo M, Misquitta L, Lee E, Rotmistrovsky K, Greenhut SF, Schaefer CF, Buetow K, Bonner TI, Haussler D, Kent J, Kiekhaus M, Furey T, Brent M, Prange C, Schreiber K, Shapiro N, Bhat NK, Hopkins RF, Hsie F, Driscoll T, Soares MB, Casavant TL, Scheetz TE, Brown-stein MJ, Usdin TB, Toshiyuki S, Carninci P, Piao Y, Dudekula DB, Ko MS, Kawakami K, Suzuki Y, Sugano S, Gruber CE, Smith MR, Simmons B, Moore T, Waterman R, Johnson SL, Ruan Y, Wei CL, Mathavan S, Gunaratne PH, Wu J, Garcia AM, Hulyk SW, Fuh E, Yuan Y, Sneed A, Kowis C, Hodgson A, Muzny DM, McPherson J, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madari A, Young AC, Wetherby KD, Granite SJ, Kwong PN, Brinkley CP, Pearson RL, Bouffard GG, Blakesly RW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Griffith M, Griffith OL, Krzywinski MI, Liao N, Morin R, Morrin R, Palmquist D, Petrescu AS, Skalska U, Smailus DE, Stott JM, Schnerch A, Schein JE, Jones SJ, Holt RA, Baross A, Marra MA, Clifton S, Makowski KA, Bosak S, Malek J, MGC Project Team
Genome Res. 2004
PubMed ID: 15489334
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The highly conserved and multifunctional NuA4 HAT complex.
Doyon Y, Côté J
Curr Opin Genet Dev. 2004
PubMed ID: 15196461
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Developmentally essential protein flightless I is a nuclear receptor coactivator with actin binding activity.
Lee YH, Campbell HD, Stallcup MR
Mol Cell Biol. 2004
PubMed ID: 14966289
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Structural and functional conservation of the NuA4 histone acetyltransferase complex from yeast to humans.
Doyon Y, Selleck W, Lane WS, Tan S, Côté J
Mol Cell Biol. 2004
PubMed ID: 14966270
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A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway.
Bouwmeester T, Bauch A, Ruffner H, Angrand PO, Bergamini G, Croughton K, Cruciat C, Eberhard D, Gagneur J, Ghidelli S, Hopf C, Huhse B, Mangano R, Michon AM, Schirle M, Schlegl J, Schwab M, Stein MA, Bauer A, Casari G, Drewes G, Gavin AC, Jackson DB, Joberty G, Neubauer G, Rick J, Kuster B, Superti-Furga G
Nat Cell Biol. 2004
PubMed ID: 14743216
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Complete sequencing and characterization of 21,243 full-length human cDNAs.
Ota T, Suzuki Y, Nishikawa T, Otsuki T, Sugiyama T, Irie R, Wakamatsu A, Hayashi K, Sato H, Nagai K, Kimura K, Makita H, Sekine M, Obayashi M, Nishi T, Shibahara T, Tanaka T, Ishii S, Yamamoto J, Saito K, Kawai Y, Isono Y, Nakamura Y, Nagahari K, Murakami K, Yasuda T, Iwayanagi T, Wagatsuma M, Shiratori A, Sudo H, Hosoiri T, Kaku Y, Kodaira H, Kondo H, Sugawara M, Takahashi M, Kanda K, Yokoi T, Furuya T, Kikkawa E, Omura Y, Abe K, Kamihara K, Katsuta N, Sato K, Tanikawa M, Yamazaki M, Ninomiya K, Ishibashi T, Yamashita H, Murakawa K, Fujimori K, Tanai H, Kimata M, Watanabe M, Hiraoka S, Chiba Y, Ishida S, Ono Y, Takiguchi S, Watanabe S, Yosida M, Hotuta T, Kusano J, Kanehori K, Takahashi-Fujii A, Hara H, Tanase TO, Nomura Y, Togiya S, Komai F, Hara R, Takeuchi K, Arita M, Imose N, Musashino K, Yuuki H, Oshima A, Sasaki N, Aotsuka S, Yoshikawa Y, Matsunawa H, Ichihara T, Shiohata N, Sano S, Moriya S, Momiyama H, Satoh N, Takami S, Terashima Y, Suzuki O, Nakagawa S, Senoh A, Mizoguchi H, Goto Y, Shimizu F, Wakebe H, Hishigaki H, Watanabe T, Sugiyama A, Takemoto M, Kawakami B, Yamazaki M, Watanabe K, Kumagai A, Itakura S, Fukuzumi Y, Fujimori Y, Komiyama M, Tashiro H, Tanigami A, Fujiwara T, Ono T, Yamada K, Fujii Y, Ozaki K, Hirao M, Ohmori Y, Kawabata A, Hikiji T, Kobatake N, Inagaki H, Ikema Y, Okamoto S, Okitani R, Kawakami T, Noguchi S, Itoh T, Shigeta K, Senba T, Matsumura K, Nakajima Y, Mizuno T, Morinaga M, Sasaki M, Togashi T, Oyama M, Hata H, Watanabe M, Komatsu T, Mizushima-Sugano J, Satoh T, Shirai Y, Takahashi Y, Nakagawa K, Okumura K, Nagase T, Nomura N, Kikuchi H, Masuho Y, Yamashita R, Nakai K, Yada T, Nakamura Y, Ohara O, Isogai T, Sugano S
Nat Genet. 2004
PubMed ID: 14702039
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Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention.
Zambrowicz BP, Abuin A, Ramirez-Solis R, Richter LJ, Piggott J, BeltrandelRio H, Buxton EC, Edwards J, Finch RA, Friddle CJ, Gupta A, Hansen G, Hu Y, Huang W, Jaing C, Key BW, Kipp P, Kohlhauff B, Ma ZQ, Markesich D, Payne R, Potter DG, Qian N, Shaw J, Schrick J, Shi ZZ, Sparks MJ, Van Sligtenhorst I, Vogel P, Walke W, Xu N, Zhu Q, Person C, Sands AT
Proc Natl Acad Sci U S A. 2003
PubMed ID: 14610273
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mSin3A/histone deacetylase 2- and PRMT5-containing Brg1 complex is involved in transcriptional repression of the Myc target gene cad.
Pal S, Yun R, Datta A, Lacomis L, Erdjument-Bromage H, Kumar J, Tempst P, Sif S
Mol Cell Biol. 2003
PubMed ID: 14559996
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Identification of new subunits of the multiprotein mammalian TRRAP/TIP60-containing histone acetyltransferase complex.
Cai Y, Jin J, Tomomori-Sato C, Sato S, Sorokina I, Parmely TJ, Conaway RC, Conaway JW
J Biol Chem. 2003
PubMed ID: 12963728
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Cytoplasmic localization and nucleo-cytoplasmic shuttling of BAF53, a component of chromatin-modifying complexes.
Lee JH, Chang SH, Shim JH, Lee JY, Yoshida M, Kwon H
Mol Cells. 2003
PubMed ID: 14503849
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A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome.
Hansen J, Floss T, Van Sloun P, Füchtbauer EM, Vauti F, Arnold HH, Schnütgen F, Wurst W, von Melchner H, Ruiz P
Proc Natl Acad Sci U S A. 2003
PubMed ID: 12904583
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The chromatin-remodeling complex WINAC targets a nuclear receptor to promoters and is impaired in Williams syndrome.
Kitagawa H, Fujiki R, Yoshimura K, Mezaki Y, Uematsu Y, Matsui D, Ogawa S, Unno K, Okubo M, Tokita A, Nakagawa T, Ito T, Ishimi Y, Nagasawa H, Matsumoto T, Yanagisawa J, Kato S
Cell. 2003
PubMed ID: 12837248
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Novel SWI/SNF chromatin-remodeling complexes contain a mixed-lineage leukemia chromosomal translocation partner.
Nie Z, Yan Z, Chen EH, Sechi S, Ling C, Zhou S, Xue Y, Yang D, Murray D, Kanakubo E, Cleary ML, Wang W
Mol Cell Biol. 2003
PubMed ID: 12665591
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BayGenomics: a resource of insertional mutations in mouse embryonic stem cells.
Stryke D, Kawamoto M, Huang CC, Johns SJ, King LA, Harper CA, Meng EC, Lee RE, Yee A, L'Italien L, Chuang PT, Young SG, Skarnes WC, Babbitt PC, Ferrin TE
Nucleic Acids Res. 2003
PubMed ID: 12520002
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Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.
Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T, Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P, Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH, Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW, Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW, Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U, Smailus DE, Schnerch A, Schein JE, Jones SJ, Marra MA, Mammalian Gene Collection Program Team
Proc Natl Acad Sci U S A. 2002
PubMed ID: 12477932
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Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, Nogami A, Schönbach C, Gojobori T, Baldarelli R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A, Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V, Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF, Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ, Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL, Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR, Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K, Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R, Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C, Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z, Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N, Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K, Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A, Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M, Waterston R, Lander ES, Rogers J, Birney E, Hayashizaki Y, FANTOM Consortium, RIKEN Genome Exploration Research Group Phase I & II Team
Nature. 2002
PubMed ID: 12466851
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Brain-specific expression of the nuclear actin-related protein ArpNalpha and its involvement in mammalian SWI/SNF chromatin remodeling complex.
Kuroda Y, Oma Y, Nishimori K, Ohta T, Harata M
Biochem Biophys Res Commun. 2002
PubMed ID: 12437990
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Identification of a polymorphic, neuron-specific chromatin remodeling complex.
Olave I, Wang W, Xue Y, Kuo A, Crabtree GR
Genes Dev. 2002
PubMed ID: 12368262
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Alternative splicing products of the gene for a human nuclear actin-related protein, hArpNbeta/Baf53, that encode a protein isoform, hArpNbetaS, in the cytoplasm.
Ohfuchi E, Nishimori K, Harata M
Biosci Biotechnol Biochem. 2002
PubMed ID: 12353638
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BAF53 forms distinct nuclear complexes and functions as a critical c-Myc-interacting nuclear cofactor for oncogenic transformation.
Park J, Wood MA, Cole MD
Mol Cell Biol. 2002
PubMed ID: 11839798
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SYT associates with human SNF/SWI complexes and the C-terminal region of its fusion partner SSX1 targets histones.
Kato H, Tjernberg A, Zhang W, Krutchinsky AN, An W, Takeuchi T, Ohtsuki Y, Sugano S, de Bruijn DR, Chait BT, Roeder RG
J Biol Chem. 2002
PubMed ID: 11734557
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Role of the Sin3-histone deacetylase complex in growth regulation by the candidate tumor suppressor p33(ING1).
Kuzmichev A, Zhang Y, Erdjument-Bromage H, Tempst P, Reinberg D
Mol Cell Biol. 2002
PubMed ID: 11784859
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Fanconi anemia protein, FANCA, associates with BRG1, a component of the human SWI/SNF complex.
Otsuki T, Furukawa Y, Ikeda K, Endo H, Yamashita T, Shinohara A, Iwamatsu A, Ozawa K, Liu JM
Hum Mol Genet. 2001
PubMed ID: 11726552
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The p400 complex is an essential E1A transformation target.
Fuchs M, Gerber J, Drapkin R, Sif S, Ikura T, Ogryzko V, Lane WS, Nakatani Y, Livingston DM
Cell. 2001
PubMed ID: 11509179
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Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs.
Wiemann S, Weil B, Wellenreuther R, Gassenhuber J, Glassl S, Ansorge W, Böcher M, Blöcker H, Bauersachs S, Blum H, Lauber J, Düsterhöft A, Beyer A, Köhrer K, Strack N, Mewes HW, Ottenwälder B, Obermaier B, Tampe J, Heubner D, Wambutt R, Korn B, Klein M, Poustka A
Genome Res. 2001
PubMed ID: 11230166
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Identification of a nuclear protein ArpN as a component of human SWI/SNF complex and its selective association with a subset of active genes.
Sung YH, Choi EY, Kwon H
Mol Cells. 2001
PubMed ID: 11266125
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Identification of the human crooked neck gene by comparative gene identification.
Lai CH, Chiu JY, Lin W
Biochim Biophys Acta. 2001
PubMed ID: 11342225
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Functional annotation of a full-length mouse cDNA collection.
Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y, Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T, Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K, Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W, Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F, Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M, Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N, Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C, Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA, Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J, Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto N, Sasaki H, Sato K, Schönbach C, Seya T, Shibata Y, Storch KF, Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L, Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S, Hayashizaki Y, RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature. 2001
PubMed ID: 11217851
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The human SWI/SNF-B chromatin-remodeling complex is related to yeast rsc and localizes at kinetochores of mitotic chromosomes.
Xue Y, Canman JC, Lee CS, Nie Z, Yang D, Moreno GT, Young MK, Salmon ED, Wang W
Proc Natl Acad Sci U S A. 2000
PubMed ID: 11078522
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RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer.
Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K, Togawa Y
Genome Res. 2000
PubMed ID: 11076861
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Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes.
Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M, Konno H, Okazaki Y, Muramatsu M, Hayashizaki Y
Genome Res. 2000
PubMed ID: 11042159
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Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing.
Simpson JC, Wellenreuther R, Poustka A, Pepperkok R, Wiemann S
EMBO Rep. 2000
PubMed ID: 11256614
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Involvement of the TIP60 histone acetylase complex in DNA repair and apoptosis.
Ikura T, Ogryzko VV, Grigoriev M, Groisman R, Wang J, Horikoshi M, Scully R, Qin J, Nakatani Y
Cell. 2000
PubMed ID: 10966108
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Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray.
Tanaka TS, Jaradat SA, Lim MK, Kargul GJ, Wang X, Grahovac MJ, Pantano S, Sano Y, Piao Y, Nagaraja R, Doi H, Wood WH, Becker KG, Ko MS
Proc Natl Acad Sci U S A. 2000
PubMed ID: 10922068
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Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development.
Ko MS, Kitchen JR, Wang X, Threat TA, Wang X, Hasegawa A, Sun T, Grahovac MJ, Kargul GJ, Lim MK, Cui Y, Sano Y, Tanaka T, Liang Y, Mason S, Paonessa PD, Sauls AD, DePalma GE, Sharara R, Rowe LB, Eppig J, Morrell C, Doi H
Development. 2000
PubMed ID: 10725249
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Two isoforms of a human actin-related protein show nuclear localization and mutually selective expression between brain and other tissues.
Harata M, Mochizuki R, Mizuno S
Biosci Biotechnol Biochem. 1999
PubMed ID: 10380635
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Reconstitution of a core chromatin remodeling complex from SWI/SNF subunits.
Phelan ML, Sif S, Narlikar GJ, Kingston RE
Mol Cell. 1999
PubMed ID: 10078207
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Actin-related proteins.
Schafer DA, Schroer TA
Annu Rev Cell Dev Biol. 1999
PubMed ID: 10611965
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High-efficiency full-length cDNA cloning.
Carninci P, Hayashizaki Y
Methods Enzymol. 1999
PubMed ID: 10349636
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Rapid and phosphoinositol-dependent binding of the SWI/SNF-like BAF complex to chromatin after T lymphocyte receptor signaling.
Zhao K, Wang W, Rando OJ, Xue Y, Swiderek K, Kuo A, Crabtree GR
Cell. 1998
PubMed ID: 9845365
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A human RNA polymerase II complex containing factors that modify chromatin structure.
Cho H, Orphanides G, Sun X, Yang XJ, Ogryzko V, Lees E, Nakatani Y, Reinberg D
Mol Cell Biol. 1998
PubMed ID: 9710619
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Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library.
Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, Suyama A, Sugano S
Gene. 1997
PubMed ID: 9373149
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Purification and biochemical heterogeneity of the mammalian SWI-SNF complex.
Wang W, Côté J, Xue Y, Zhou S, Khavari PA, Biggar SR, Muchardt C, Kalpana GV, Goff SP, Yaniv M, Workman JL, Crabtree GR
EMBO J. 1996
PubMed ID: 8895581
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Normalization and subtraction: two approaches to facilitate gene discovery.
Bonaldo MF, Lennon G, Soares MB
Genome Res. 1996
PubMed ID: 8889548
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Diversity and specialization of mammalian SWI/SNF complexes.
Wang W, Xue Y, Zhou S, Kuo A, Cairns BR, Crabtree GR
Genes Dev. 1996
PubMed ID: 8804307
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Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides.
Maruyama K, Sugano S
Gene. 1994
PubMed ID: 8125298
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