TAP1

  Summary from T1DBase   Top   Help
Gene Description:   transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
Synonyms:   Ham1, ABC17, MGC124549, PSF1, FLJ26666, ABCB2, TAP1N, Abcb2, APT1, D6S114E, MTP1, RING4, Tap-1, FLJ41500, TAP1, PSF-1, Cim, TAP, Y3, TAP1*0102N, Ham-1, Tap1
Orthologs:   Human TAP1 (protein-coding), Mouse Tap1 (protein-coding), Rat Tap1 (protein-coding)
 
expander Sources
  Regions of Interest Overlapping this feature from T1DBase   Top   Help
Regions Overlapping this Feature:  Human: 1 Mouse: 1
expander Associated Regions: Available
Regions were calculated based on variants available for a large study with a convincing p-value (P < 5 x 10-8) +/- 0.1cM, and then these regions were examined for genes based on the current set of T1DBase gene spans.
Region Species Chromosomal Location Mb Number of genes Marker
MHC Human chr6:29910021..33498585 3.59 688
expander Linkage Regions: Available
  Gene Overview from T1DBase   Top   Help
expander (Human) GRCh37 - chr6:32812986..32821755 (8.77 kb)  View in Genome Browser
expander (Mouse) NCBIM37 - chr17:34324498..34334170 (9.67 kb)  View in Genome Browser
expander (Rat) RGSC3.4 - chr20:4790363..4800997 (10.63 kb)  View in Genome Browser
  Beta Cell Gene Atlas from T1DBase   Top   Help

Users should be aware that the scale represents a rank within an experiment rather than a normalized expression signal.
 
Human Mouse Rat
ductal cells exocrine pancreas pancreatic islets primary beta cells Pancreatic Islets MPSS beta cell line pancreatic islets whole pancreas alpha cell beta cell line pancreatic islets primary beta cells whole pancreas
 
 
 
 
 
 
 
 
 
 
 
 
 
expander Expression Legend
  Tissue Expression   Top   Help

Users should be aware that the scale represents a rank within an experiment rather than a normalized expression signal.
 
/expression/atlas-PB_CD14+_Monocytes.png /expression/atlas-PB_CD56+_NK_Cells.png /expression/atlas-PB_CD19-_B_Cells.png /expression/atlas-PB_CD4+_T_Cells.png /expression/atlas-PB_CD8+_T_Cells.png /expression/atlas-PB_BDCA4+_Dendritic_Cells.png /expression/atlas-721_B_Lymphoblasts.png /expression/atlas-Lymph_Node.png /expression/atlas-Thymus.png /expression/atlas-Salivary_Gland.png /expression/atlas-Bone_Marrow.png /expression/atlas-BM_CD34+.png /expression/atlas-Heart.png /expression/atlas-Skeletal_Muscle.png /expression/atlas-Kidney.png /expression/atlas-Liver.png /expression/atlas-Lung.png /expression/atlas-Pancreas.png /expression/atlas-Pancreatic_Islets.png /expression/atlas-Trachea.png /expression/atlas-Pituitary.png /expression/atlas-Thyroid.png /expression/atlas-Amygdala.png /expression/atlas-Caudate_Nucleus.png /expression/atlas-Cerebellum.png /expression/atlas-Hypothalamus.png /expression/atlas-Spinal_cord.png /expression/atlas-Thalamus.png /expression/atlas-Skin.png /expression/atlas-Ovary.png /expression/atlas-Placenta.png /expression/atlas-Prostate.png /expression/atlas-Testis.png /expression/atlas-Uterus.png
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
expander Expression Legend
  HaemAtlas Expression   Top   Help
Symbols represent expression compared with the overall mean. Please click 'HaemAtlasProfile' link below for associated probe mappings and a detailed profile.
CD Marker EB MK CD66b CD14 CD19 CD8 CD4 CD56
Expression Pattern Low Low High High High High High High HaemAtlasProfile
expander Expression Legend
  Interactions from T1DBase   Top   Help
expander Interactions Table for TAP1:
  Cross-Reference to Pathways and GO Terms   Top   Help
expander View all
expander KEGG Network: 4
expander Biocarta: 1
Reactome: None available
expander NCI-Nature Pathway Interaction Database: 1
expander Gene Ontology: 35
  Publications   Top   Help
expander Type 1 Diabetes Publications: 14
expander Publications: 381
  Model Organism Phenotype Links   Top   Help
This section provides links to model organism phenotype resources. Currently only to mouse phenotypes.
Organism Phenotype Resources
Mouse MGI:98483 IKMC
  External Links   Top   Help
  Human Mouse Rat
Entrez Gene 6890 21354 24811
EnsEMBL Gene(s) ENSG00000168394 ENSG00000206297 ENSG00000224212 ENSG00000224748 ENSG00000226173 ENSG00000227816 ENSG00000230705 ENSG00000232367 ENSMUSG00000037321 ENSRNOG00000000457
Unigene Hs.352018 Mm.482076 Rn.10763
Homologene TAP1 Tap1 Tap1
OMIM 170260 N/A N/A
GeneCards TAP1 N/A N/A
Beta Cell Genomics DT.100710765 DT.121353423 DT.97848033 DT.97861334 DT.492387 DT.91356712 DT.94391640 DT.97342438 DT.99851711 N/A
Reactome N/A N/A N/A
Plasma Peptide Atlas N/A N/A N/A
MGI N/A MGI:98483 N/A
WikiGenes 6890 21354 24811
  External resources (dkCOIN) from NIDDK Consortium Interconnectivity Network   Top   Help
dkCOIN_click Relevant resources:
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