SRSF7
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(Human) GRCh37 - chr2:38970741..38978636 (7.89 kb) View in Genome Browser
(Mouse) NCBIM37 - chr17:80599420..80606645 (7.22 kb) View in Genome Browser
(Rat) RGSC3.4 - chr6:3098735..3104433 (5.70 kb) View in Genome Browser
HaemAtlas Expression Table for SRSF7:
Expression Legend
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Cell Types Showing Expression: Available
Users should be aware that the scale represents a rank within an experiment rather than a normalized expression signal.
| Human | Mouse | Rat | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ductal cells | exocrine pancreas | pancreatic islets | primary beta cells | Pancreatic Islets MPSS | beta cell line | pancreatic islets | whole pancreas | alpha cell | beta cell line | pancreatic islets | primary beta cells | whole pancreas |
| no data | no data | |||||||||||
Expression Legend
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The Beta Cell Gene Atlas is a collection of almost all available public microarray data generated with pancreatic beta cells and related cell lines and types. The expression data comes from 131 array analyses derived from 28 experiments (open details in a new window). The basal (untreated cell) expression signal intensity values in each array were converted to ranks within the experiments; the highest value was used for genes represented by more than one probe. The rank values of genes in a given cell type were averaged with other calculated values from experiments performed with the same cell type. The rank transformation of the expression values enable comparison of gene expression across different organisms and tissues.
A red border around a cell indicates greater certainty in the data; specifically, the gene has >0.95 probability of being expressed in the tissue.
Tissues Showing Expression: Available
| Users should be aware that the scale represents a rank within an experiment rather than a normalized expression signal. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Expression Legend
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| Signal intensity values were converted to ranks within the experiments. For genes represented by more than one probeset, we averaged the intensity signals for each probeset across all tissues and chose the probeset with the highest average value. The rank transformation of the expression values enables comparison of gene expression across different organisms and tissues. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Interactions Table for SRSF7:The SRSF7 interactions are shown below. Each row lists the two interactors, the sources which document this as an interaction, a classification of the interaction as empirical or predicted, and Pubmed IDs (if any) for the interaction.
The table of interactions is downloadable as a text file. Please note that the text file will not include data from HPRD due to restrictions imposed by the HPRD funding sources.
| Interactor | Interactor | Sources | Classification | Pubmed IDs |
| SRSF7 | RBM5 | Reactome | predicted | 12176931 11991638 12477934 6088074 6206566 |
| SRSF7 | ALYREF | Reactome | predicted | 12176931 11991638 12477934 |
| SRSF7 | CDK6 | IntAct | empirical | 22094256 |
| SRSF7 | HNRNPR | Reactome | predicted | 12176931 12477934 6088074 6206566 |
| SRSF7 | SRRM1 | BioGRID, Reactome | empirical | 16159877 12176931 11991638 12477934 |
| SRSF7 | CD2BP2 | Reactome | predicted | 12176931 11991638 12477934 6088074 6206566 |
| SRSF7 | NXF1 | HPRD, MINT, IntAct | empirical | 15184380 17036044 |
| SRSF7 | PAPOLA | Reactome | predicted | |
| SRSF7 | RNPS1 | BioGRID | empirical | 17353931 |
| SRSF7 | HNRNPA0 | Reactome | predicted | 12176931 12477934 6088074 6206566 |
| SRSF7 | CPSF6 | HPRD | empirical | 16055720 |
| SRSF7 | HNRNPUL1 | Reactome | predicted | 12176931 11991638 12477934 6088074 6206566 |
| SRSF7 | GABARAP | IntAct | empirical | 20562859 |
| SRSF7 | U2AF2 | Reactome | predicted | 12176931 11991638 12477934 6088074 6206566 |
| SRSF7 | GABARAPL2 | IntAct | empirical | 20562859 |
| SRSF7 | SREK1 | HPRD, BioGRID | empirical | 14559993 |
| SRSF7 | DHX9 | Reactome | predicted | 12176931 11991638 12477934 6088074 6206566 |
| SRSF7 | ESR1 | IntAct | empirical | 21182205 |
| SRSF7 | HNRNPA3 | Reactome | predicted | 12176931 12477934 6088074 6206566 |
| SRSF7 | DNAJC8 | Reactome | predicted | 12176931 11991638 6088074 6206566 |
| SRSF7 | CDK19 | HPRD, BioGRID | empirical | 12501247 |
| SRSF7 | GABARAPL1 | IntAct | empirical | 20562859 |
| SRSF7 | FUS | Reactome | predicted | 12176931 11991638 12477934 6088074 6206566 |
| SRSF7 | RBMX | Reactome | predicted | 12176931 12477934 6088074 6206566 |
| SRSF7 | GNRH1 | IntAct | empirical | 16249178 |
| SRSF7 | TRA2A | IntAct | empirical | 16249178 |
| SRSF7 | HDGF | IntAct | empirical | 21907836 |
| SRSF7 | HNRNPA1 | Reactome | predicted | 12176931 12477934 6088074 6206566 |
| SRSF7 | HNRNPA2B1 | Reactome | predicted | 12176931 12477934 6088074 6206566 |
| SRSF7 | HNRNPC | Reactome | predicted | 12176931 12477934 6088074 6206566 |
| SRSF7 | HNRNPD | Reactome | predicted | 12176931 12477934 6088074 6206566 |
| SRSF7 | HNRNPF | Reactome | predicted | 12176931 12477934 6088074 6206566 |
| SRSF7 | HNRNPH1 | Reactome | predicted | 12176931 12477934 6088074 6206566 |
| SRSF7 | HNRNPH2 | Reactome | predicted | 12176931 12477934 6088074 6206566 |
| SRSF7 | HNRNPK | Reactome | predicted | 12176931 12477934 6088074 6206566 |
| SRSF7 | HNRNPL | Reactome | predicted | 12176931 12477934 6088074 6206566 |
| SRSF7 | HNRNPU | Reactome | predicted | 12176931 12477934 6088074 6206566 |
| SRSF7 | IFIT3 | IntAct | empirical | 21642987 |
| SRSF7 | HNRNPM | Reactome | predicted | 12176931 12477934 6088074 6206566 |
| SRSF7 | NFX1 | Reactome | predicted | 12176931 11991638 12477934 |
| SRSF7 | YBX1 | Reactome | predicted | 12176931 11991638 12477934 6088074 6206566 |
| SRSF7 | PCBP1 | Reactome | predicted | 12176931 12477934 6088074 6206566 |
| SRSF7 | PCBP2 | HPRD, Reactome | empirical | 8871564 12176931 12477934 6088074 6206566 |
| SRSF7 | CDC40 | Reactome | predicted | 12176931 11991638 6088074 6206566 |
| SRSF7 | CCAR1 | Reactome | predicted | 12176931 11991638 12477934 6088074 6206566 |
| SRSF7 | PTBP1 | Reactome | predicted | 12176931 12477934 6088074 6206566 |
| SRSF7 | SUGP1 | Reactome | predicted | 12176931 11991638 12477934 6088074 6206566 |
| SRSF7 | RBBP6 | IntAct, BioGRID | empirical | 18624398 |
| SRSF7 | SRSF1 | Reactome | predicted | 12176931 11991638 12477934 6088074 6206566 |
| SRSF7 | SRSF2 | Reactome | predicted | 12176931 11991638 12477934 6088074 6206566 |
| SRSF7 | SRSF3 | Reactome | predicted | 12176931 11991638 12477934 6088074 6206566 |
| SRSF7 | SRSF4 | Reactome | predicted | 12176931 11991638 6088074 6206566 |
| SRSF7 | SRSF5 | Reactome | predicted | 12176931 11991638 12477934 6088074 6206566 |
| SRSF7 | SRSF6 | Reactome | predicted | 12176931 11991638 12477934 6088074 6206566 |
| SRSF7 | U2AF1 | Reactome | predicted | 12176931 11991638 12477934 6088074 6206566 |
| SRSF7 | UBC | BioGRID | empirical | 22178446 21139048 21890473 21906983 |
| SRSF7 | PABPN1 | Reactome | predicted | |
| SRSF7 | MAP1LC3B | IntAct | empirical | 20562859 |
| SRSF7 | CCNL2 | HPRD | empirical | 14684736 |
| SRSF7 | SF3A2 | MINT | empirical | 17332742 |
| SRSF7 | SMC1A | Reactome | predicted | 12176931 11991638 12477934 6088074 6206566 |
| SRSF7 | DUSP11 | HPRD, BioGRID | empirical | 9685386 |
| SRSF7 | MAP1LC3A | IntAct | empirical | 20562859 |
| SRSF7 | SRSF9 | Reactome | predicted | 12176931 11991638 12477934 6088074 6206566 |
| SRSF7 | SRSF11 | Reactome | predicted | 12176931 11991638 6088074 6206566 |
| SRSF7 | RBM39 | BioGRID | empirical | 16051665 |
| SRSF7 | KIAA0101 | BioGRID | empirical | 21628590 |
| SRSF7 | DHX38 | Reactome | predicted | 12176931 11991638 6088074 6206566 |
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Publications: 74
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Integrative analysis of the ubiquitin proteome isolated using Tandem Ubiquitin Binding Entities (TUBEs).
Lopitz-Otsoa F, Rodriguez-Suarez E, Aillet F, Casado-Vela J, Lang V, Matthiesen R, Elortza F, Rodriguez MS
J Proteomics. 2011
PubMed ID: 22178446
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A conditional knockout resource for the genome-wide study of mouse gene function.
Skarnes WC, Rosen B, West AP, Koutsourakis M, Bushell W, Iyer V, Mujica AO, Thomas M, Harrow J, Cox T, Jackson D, Severin J, Biggs P, Fu J, Nefedov M, de Jong PJ, Stewart AF, Bradley A
Nature. 2011
PubMed ID: 21677750
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SFRS7-mediated splicing of tau exon 10 is directly regulated by STOX1A in glial cells.
van Abel D, Hölzel DR, Jain S, Lun FM, Zheng YW, Chen EZ, Sun H, Chiu RW, Lo YM, van Dijk M, Oudejans CB
PLoS One. 2011
PubMed ID: 21755018
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Initial characterization of the human central proteome.
Burkard TR, Planyavsky M, Kaupe I, Breitwieser FP, Bürckstümmer T, Bennett KL, Superti-Furga G, Colinge J
BMC Syst Biol. 2011
PubMed ID: 21269460
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Novel cis-active structures in the coding region mediate CRM1-dependent nuclear export of IFN-α 1 mRNA.
Kimura T, Hashimoto I, Nishizawa M, Ito S, Yamada H
Med Mol Morphol. 2010
PubMed ID: 20857263
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SR proteins SRp20 and 9G8 contribute to efficient export of herpes simplex virus 1 mRNAs.
Escudero-Paunetto L, Li L, Hernandez FP, Sandri-Goldin RM
Virology. 2010
PubMed ID: 20227104
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A rational nomenclature for serine/arginine-rich protein splicing factors (SR proteins).
Manley JL, Krainer AR
Genes Dev. 2010
PubMed ID: 20516191
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HIV-1 mRNA 3' end processing is distinctively regulated by eIF3f, CDK11, and splice factor 9G8.
Valente ST, Gilmartin GM, Venkatarama K, Arriagada G, Goff SP
Mol Cell. 2009
PubMed ID: 19854136
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Proteomics analysis of nucleolar SUMO-1 target proteins upon proteasome inhibition.
Matafora V, D'Amato A, Mori S, Blasi F, Bachi A
Mol Cell Proteomics. 2009
PubMed ID: 19596686
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Lysine acetylation targets protein complexes and co-regulates major cellular functions.
Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, Walther TC, Olsen JV, Mann M
Science. 2009
PubMed ID: 19608861
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Lineage-specific biology revealed by a finished genome assembly of the mouse.
Church DM, Goodstadt L, Hillier LW, Zody MC, Goldstein S, She X, Bult CJ, Agarwala R, Cherry JL, DiCuccio M, Hlavina W, Kapustin Y, Meric P, Maglott D, Birtle Z, Marques AC, Graves T, Zhou S, Teague B, Potamousis K, Churas C, Place M, Herschleb J, Runnheim R, Forrest D, Amos-Landgraf J, Schwartz DC, Cheng Z, Lindblad-Toh K, Eichler EE, Ponting CP, Mouse Genome Sequencing Consortium
PLoS Biol. 2009
PubMed ID: 19468303
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Prefrontal cortex shotgun proteome analysis reveals altered calcium homeostasis and immune system imbalance in schizophrenia.
Martins-de-Souza D, Gattaz WF, Schmitt A, Rewerts C, Maccarrone G, Dias-Neto E, Turck CW
Eur Arch Psychiatry Clin Neurosci. 2009
PubMed ID: 19165527
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The SR protein family.
Shepard PJ, Hertel KJ
Genome Biol. 2009
PubMed ID: 19857271
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Solid tumor proteome and phosphoproteome analysis by high resolution mass spectrometry.
Zanivan S, Gnad F, Wickström SA, Geiger T, Macek B, Cox J, Fässler R, Mann M
J Proteome Res. 2008
PubMed ID: 19367708
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Large-scale gene trapping in C57BL/6N mouse embryonic stem cells.
Hansen GM, Markesich DC, Burnett MB, Zhu Q, Dionne KM, Richter LJ, Finnell RH, Sands AT, Zambrowicz BP, Abuin A
Genome Res. 2008
PubMed ID: 18799693
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Protein interaction data set highlighted with human Ras-MAPK/PI3K signaling pathways.
Wang J, Yuan Y, Zhou Y, Guo L, Zhang L, Kuai X, Deng B, Pan Z, Li D, He F
J Proteome Res. 2008
PubMed ID: 18624398
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A quantitative atlas of mitotic phosphorylation.
Dephoure N, Zhou C, Villén J, Beausoleil SA, Bakalarski CE, Elledge SJ, Gygi SP
Proc Natl Acad Sci U S A. 2008
PubMed ID: 18669648
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Toward a confocal subcellular atlas of the human proteome.
Barbe L, Lundberg E, Oksvold P, Stenius A, Lewin E, Björling E, Asplund A, Pontén F, Brismar H, Uhlén M, Andersson-Svahn H
Mol Cell Proteomics. 2008
PubMed ID: 18029348
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Automated phosphoproteome analysis for cultured cancer cells by two-dimensional nanoLC-MS using a calcined titania/C18 biphasic column.
Imami K, Sugiyama N, Kyono Y, Tomita M, Ishihama Y
Anal Sci. 2008
PubMed ID: 18187866
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The shuttling SR protein 9G8 plays a role in translation of unspliced mRNA containing a constitutive transport element.
Swartz JE, Bor YC, Misawa Y, Rekosh D, Hammarskjold ML
J Biol Chem. 2007
PubMed ID: 17513303
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Large-scale phosphorylation analysis of mouse liver.
Villén J, Beausoleil SA, Gerber SA, Gygi SP
Proc Natl Acad Sci U S A. 2007
PubMed ID: 17242355
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Large-scale mapping of human protein-protein interactions by mass spectrometry.
Ewing RM, Chu P, Elisma F, Li H, Taylor P, Climie S, McBroom-Cerajewski L, Robinson MD, O'Connor L, Li M, Taylor R, Dharsee M, Ho Y, Heilbut A, Moore L, Zhang S, Ornatsky O, Bukhman YV, Ethier M, Sheng Y, Vasilescu J, Abu-Farha M, Lambert JP, Duewel HS, Stewart II, Kuehl B, Hogue K, Colwill K, Gladwish K, Muskat B, Kinach R, Adams SL, Moran MF, Morin GB, Topaloglou T, Figeys D
Mol Syst Biol. 2007
PubMed ID: 17353931
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SR protein 9G8 modulates splicing of tau exon 10 via its proximal downstream intron, a clustering region for frontotemporal dementia mutations.
Gao L, Wang J, Wang Y, Andreadis A
Mol Cell Neurosci. 2007
PubMed ID: 17137791
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Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.
Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, Mann M
Cell. 2006
PubMed ID: 17081983
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Molecular basis of RNA recognition and TAP binding by the SR proteins SRp20 and 9G8.
Hargous Y, Hautbergue GM, Tintaru AM, Skrisovska L, Golovanov AP, Stevenin J, Lian LY, Wilson SA, Allain FH
EMBO J. 2006
PubMed ID: 17036044
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A probability-based approach for high-throughput protein phosphorylation analysis and site localization.
Beausoleil SA, Villén J, Gerber SA, Rush J, Gygi SP
Nat Biotechnol. 2006
PubMed ID: 16964243
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BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system.
Magdaleno S, Jensen P, Brumwell CL, Seal A, Lehman K, Asbury A, Cheung T, Cornelius T, Batten DM, Eden C, Norland SM, Rice DS, Dosooye N, Shakya S, Mehta P, Curran T
PLoS Biol. 2006
PubMed ID: 16602821
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Cooperative actions of Tra2alpha with 9G8 and SRp30c in the RNA splicing of the gonadotropin-releasing hormone gene transcript.
Park E, Han J, Son GH, Lee MS, Chung S, Park SH, Park K, Lee KH, Choi S, Seong JY, Kim K
J Biol Chem. 2006
PubMed ID: 16249178
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Proteomic analysis of SRm160-containing complexes reveals a conserved association with cohesin.
McCracken S, Longman D, Marcon E, Moens P, Downey M, Nickerson JA, Jessberger R, Wilde A, Caceres JF, Emili A, Blencowe BJ
J Biol Chem. 2005
PubMed ID: 16159877
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Proteomic analysis of steady-state nuclear hormone receptor coactivator complexes.
Jung SY, Malovannaya A, Wei J, O'Malley BW, Qin J
Mol Endocrinol. 2005
PubMed ID: 16051665
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Antisense transcription in the mammalian transcriptome.
Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J, Mattick J, Hume DA, Lipovich L, Batalov S, Engström PG, Mizuno Y, Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z, Lenhard B, Wahlestedt C, RIKEN Genome Exploration Research Group, Genome Science Group (Genome Network Project Core Group), FANTOM Consortium
Science. 2005
PubMed ID: 16141073
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The transcriptional landscape of the mammalian genome.
Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R, Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T, Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M, Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M, Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A, Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L, Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L, Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K, Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R, Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V, Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL, Sandelin A, Schneider C, Schönbach C, Sekiguchi K, Semple CA, Seno S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D, Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y, Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM, Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T, Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H, Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K, Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y, Suzuki H, Kawai J, Hayashizaki Y, FANTOM Consortium, RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science. 2005
PubMed ID: 16141072
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WW domains provide a platform for the assembly of multiprotein networks.
Ingham RJ, Colwill K, Howard C, Dettwiler S, Lim CS, Yu J, Hersi K, Raaijmakers J, Gish G, Mbamalu G, Taylor L, Yeung B, Vassilovski G, Amin M, Chen F, Matskova L, Winberg G, Ernberg I, Linding R, O'donnell P, Starostine A, Keller W, Metalnikov P, Stark C, Pawson T
Mol Cell Biol. 2005
PubMed ID: 16055720
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Global phosphoproteome of HT-29 human colon adenocarcinoma cells.
Kim JE, Tannenbaum SR, White FM
J Proteome Res. 2005
PubMed ID: 16083285
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Generation and annotation of the DNA sequences of human chromosomes 2 and 4.
Hillier LW, Graves TA, Fulton RS, Fulton LA, Pepin KH, Minx P, Wagner-McPherson C, Layman D, Wylie K, Sekhon M, Becker MC, Fewell GA, Delehaunty KD, Miner TL, Nash WE, Kremitzki C, Oddy L, Du H, Sun H, Bradshaw-Cordum H, Ali J, Carter J, Cordes M, Harris A, Isak A, van Brunt A, Nguyen C, Du F, Courtney L, Kalicki J, Ozersky P, Abbott S, Armstrong J, Belter EA, Caruso L, Cedroni M, Cotton M, Davidson T, Desai A, Elliott G, Erb T, Fronick C, Gaige T, Haakenson W, Haglund K, Holmes A, Harkins R, Kim K, Kruchowski SS, Strong CM, Grewal N, Goyea E, Hou S, Levy A, Martinka S, Mead K, McLellan MD, Meyer R, Randall-Maher J, Tomlinson C, Dauphin-Kohlberg S, Kozlowicz-Reilly A, Shah N, Swearengen-Shahid S, Snider J, Strong JT, Thompson J, Yoakum M, Leonard S, Pearman C, Trani L, Radionenko M, Waligorski JE, Wang C, Rock SM, Tin-Wollam AM, Maupin R, Latreille P, Wendl MC, Yang SP, Pohl C, Wallis JW, Spieth J, Bieri TA, Berkowicz N, Nelson JO, Osborne J, Ding L, Meyer R, Sabo A, Shotland Y, Sinha P, Wohldmann PE, Cook LL, Hickenbotham MT, Eldred J, Williams D, Jones TA, She X, Ciccarelli FD, Izaurralde E, Taylor J, Schmutz J, Myers RM, Cox DR, Huang X, McPherson JD, Mardis ER, Clifton SW, Warren WC, Chinwalla AT, Eddy SR, Marra MA, Ovcharenko I, Furey TS, Miller W, Eichler EE, Bork P, Suyama M, Torrents D, Waterston RH, Wilson RK
Nature. 2005
PubMed ID: 15815621
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A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain.
McKee AE, Minet E, Stern C, Riahi S, Stiles CD, Silver PA
BMC Dev Biol. 2005
PubMed ID: 16033648
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Dual effect of the SR proteins ASF/SF2, SC35 and 9G8 on HIV-1 RNA splicing and virion production.
Jacquenet S, Decimo D, Muriaux D, Darlix JL
Retrovirology. 2005
PubMed ID: 15907217
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Gene and alternative splicing annotation with AIR.
Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M, Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail S, Li P, Sutton G
Genome Res. 2005
PubMed ID: 15632090
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Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas.
Watahiki A, Waki K, Hayatsu N, Shiraki T, Kondo S, Nakamura M, Sasaki D, Arakawa T, Kawai J, Harbers M, Hayashizaki Y, Carninci P
Nat Methods. 2004
PubMed ID: 15782199
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The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
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Genome Res. 2004
PubMed ID: 15489334
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Distinct sequence motifs within the 68-kDa subunit of cleavage factor Im mediate RNA binding, protein-protein interactions, and subcellular localization.
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J Biol Chem. 2004
PubMed ID: 15169763
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Large-scale characterization of HeLa cell nuclear phosphoproteins.
Beausoleil SA, Jedrychowski M, Schwartz D, Elias JE, Villén J, Li J, Cohn MA, Cantley LC, Gygi SP
Proc Natl Acad Sci U S A. 2004
PubMed ID: 15302935
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Hypophosphorylated ASF/SF2 binds TAP and is present in messenger ribonucleoproteins.
Lai MC, Tarn WY
J Biol Chem. 2004
PubMed ID: 15184380
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Differential effects of the SR proteins 9G8, SC35, ASF/SF2, and SRp40 on the utilization of the A1 to A5 splicing sites of HIV-1 RNA.
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J Biol Chem. 2004
PubMed ID: 15123677
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A molecular link between SR protein dephosphorylation and mRNA export.
Huang Y, Yario TA, Steitz JA
Proc Natl Acad Sci U S A. 2004
PubMed ID: 15210956
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The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome.
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RNA. 2004
PubMed ID: 15146077
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Genome sequence of the Brown Norway rat yields insights into mammalian evolution.
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Nature. 2004
PubMed ID: 15057822
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Cyclin L2, a novel RNA polymerase II-associated cyclin, is involved in pre-mRNA splicing and induces apoptosis of human hepatocellular carcinoma cells.
Yang L, Li N, Wang C, Yu Y, Yuan L, Zhang M, Cao X
J Biol Chem. 2004
PubMed ID: 14684736
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Tau exon 10, whose missplicing causes frontotemporal dementia, is regulated by an intricate interplay of cis elements and trans factors.
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J Neurochem. 2004
PubMed ID: 15009664
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Complete sequencing and characterization of 21,243 full-length human cDNAs.
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Nat Genet. 2004
PubMed ID: 14702039
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Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention.
Zambrowicz BP, Abuin A, Ramirez-Solis R, Richter LJ, Piggott J, BeltrandelRio H, Buxton EC, Edwards J, Finch RA, Friddle CJ, Gupta A, Hansen G, Hu Y, Huang W, Jaing C, Key BW, Kipp P, Kohlhauff B, Ma ZQ, Markesich D, Payne R, Potter DG, Qian N, Shaw J, Schrick J, Shi ZZ, Sparks MJ, Van Sligtenhorst I, Vogel P, Walke W, Xu N, Zhu Q, Person C, Sands AT
Proc Natl Acad Sci U S A. 2003
PubMed ID: 14610273
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Regulation of alternative splicing by SRrp86 and its interacting proteins.
Li J, Hawkins IC, Harvey CD, Jennings JL, Link AJ, Patton JG
Mol Cell Biol. 2003
PubMed ID: 14559993
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A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome.
Hansen J, Floss T, Van Sloun P, Füchtbauer EM, Vauti F, Arnold HH, Schnütgen F, Wurst W, von Melchner H, Ruiz P
Proc Natl Acad Sci U S A. 2003
PubMed ID: 12904583
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CDK11 complexes promote pre-mRNA splicing.
Hu D, Mayeda A, Trembley JH, Lahti JM, Kidd VJ
J Biol Chem. 2003
PubMed ID: 12501247
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Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.
Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T, Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P, Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH, Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW, Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW, Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U, Smailus DE, Schnerch A, Schein JE, Jones SJ, Marra MA, Mammalian Gene Collection Program Team
Proc Natl Acad Sci U S A. 2002
PubMed ID: 12477932
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Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
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Nature. 2002
PubMed ID: 12466851
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Transcriptional activators differ in their abilities to control alternative splicing.
Nogues G, Kadener S, Cramer P, Bentley D, Kornblihtt AR
J Biol Chem. 2002
PubMed ID: 12221105
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Comprehensive proteomic analysis of the human spliceosome.
Zhou Z, Licklider LJ, Gygi SP, Reed R
Nature. 2002
PubMed ID: 12226669
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Alternative splicing of intron 3 of the serine/arginine-rich protein 9G8 gene. Identification of flanking exonic splicing enhancers and involvement of 9G8 as a trans-acting factor.
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PubMed ID: 11181995
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Nature. 2001
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RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer.
Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K, Togawa Y
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Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes.
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Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray.
Tanaka TS, Jaradat SA, Lim MK, Kargul GJ, Wang X, Grahovac MJ, Pantano S, Sano Y, Piao Y, Nagaraja R, Doi H, Wood WH, Becker KG, Ko MS
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Kidney Int. 1999
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