IFIH1

  Summary from T1DBase   Top   Help
Gene Description:   interferon induced with helicase C domain 1
Synonyms:   MDA5, RGD1560496, IFIH1, 9130009C22Rik, Helicard, MGC90959, MGC133047, Hlcd, MDA-5, Ifih1, IDDM19
Orthologs:   Human IFIH1 (protein-coding), Mouse Ifih1 (protein-coding), Rat Ifih1 (protein-coding)
 
expander Sources
  Regions of Interest Overlapping this feature from T1DBase   Top   Help
Regions Overlapping this Feature:  Human: 1 Mouse: 1 Rat: 1
expander Associated Regions: Available
Regions were calculated based on variants available for a large study with a convincing p-value (P < 5 x 10-8) +/- 0.1cM, and then these regions were examined for genes based on the current set of T1DBase gene spans.
Region Species Chromosomal Location Mb Number of genes Marker
2q24.2 Human chr2:162960873..163392761 0.43 30 rs1990760
expander Other Regions: Available
  Gene Overview from T1DBase   Top   Help
expander (Human) GRCh37 - chr2:163123589..163175213 (51.62 kb)  View in Genome Browser
expander (Mouse) NCBIM37 - chr2:62433850..62484312 (50.46 kb)  View in Genome Browser
expander (Rat) RGSC3.4 - chr3:44547092..44593969 (46.88 kb)  View in Genome Browser
  Beta Cell Gene Atlas from T1DBase   Top   Help

Users should be aware that the scale represents a rank within an experiment rather than a normalized expression signal.
 
Human Mouse Rat
ductal cells exocrine pancreas pancreatic islets primary beta cells Pancreatic Islets MPSS beta cell line pancreatic islets whole pancreas alpha cell beta cell line pancreatic islets primary beta cells whole pancreas
 
 
 
 
 
 
 
 
no data no data no data no data no data
expander Expression Legend
  Tissue Expression   Top   Help

Users should be aware that the scale represents a rank within an experiment rather than a normalized expression signal.
 
/expression/atlas-PB_CD14+_Monocytes.png /expression/atlas-PB_CD56+_NK_Cells.png /expression/atlas-PB_CD19-_B_Cells.png /expression/atlas-PB_CD4+_T_Cells.png /expression/atlas-PB_CD8+_T_Cells.png /expression/atlas-PB_BDCA4+_Dendritic_Cells.png /expression/atlas-721_B_Lymphoblasts.png /expression/atlas-Lymph_Node.png /expression/atlas-Thymus.png /expression/atlas-Salivary_Gland.png /expression/atlas-Bone_Marrow.png /expression/atlas-BM_CD34+.png /expression/atlas-Heart.png /expression/atlas-Skeletal_Muscle.png /expression/atlas-Kidney.png /expression/atlas-Liver.png /expression/atlas-Lung.png /expression/atlas-Pancreas.png /expression/atlas-Pancreatic_Islets.png /expression/atlas-Trachea.png /expression/atlas-Pituitary.png /expression/atlas-Thyroid.png /expression/atlas-Amygdala.png /expression/atlas-Caudate_Nucleus.png /expression/atlas-Cerebellum.png /expression/atlas-Hypothalamus.png /expression/atlas-Spinal_cord.png /expression/atlas-Thalamus.png /expression/atlas-Skin.png /expression/atlas-Ovary.png /expression/atlas-Placenta.png /expression/atlas-Prostate.png /expression/atlas-Testis.png /expression/atlas-Uterus.png
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
expander Expression Legend
  HaemAtlas Expression   Top   Help

No HaemAtlas Expression pattern available for this gene.
  Interactions from T1DBase   Top   Help
expander Interactions Table for IFIH1:
  Cross-Reference to Pathways and GO Terms   Top   Help
expander View all
expander KEGG Network: 3
Biocarta: None available
Reactome: None available
NCI-Nature Pathway Interaction Database: None available
expander Gene Ontology: 21
  Publications   Top   Help
expander Type 1 Diabetes Publications: 29
expander Publications: 106
  Model Organism Phenotype Links   Top   Help
This section provides links to model organism phenotype resources. Currently only to mouse phenotypes.
Organism Phenotype Resources
Mouse MGI:1918836 IKMC
  External Links   Top   Help
  Human Mouse Rat
Entrez Gene 64135 71586 499801
EnsEMBL Gene(s) ENSG00000115267 ENSMUSG00000026896 ENSRNOG00000006227
Unigene Hs.163173 Mm.136224 Rn.151974
Homologene IFIH1 Ifih1 Ifih1
OMIM 606951 N/A N/A
GeneCards IFIH1 N/A N/A
Beta Cell Genomics DT.211382 DT.91910077 DT.101196895 DT.103561066 DT.491550 DT.99851790 N/A
Reactome N/A N/A N/A
Plasma Peptide Atlas N/A N/A N/A
MGI N/A MGI:1918836 N/A
WikiGenes 64135 71586 499801
  External resources (dkCOIN) from NIDDK Consortium Interconnectivity Network   Top   Help
dkCOIN_click Relevant resources:
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