UBQLN4

Summary Top Help

Gene Description:

ubiquilin 4

Synonyms:

A1U, C1orf6, RGD1308273, Ubqln4, A1u, CIP75, AI663987, UBQLN4, UBIN

Orthologs:

Human UBQLN4 (protein-coding), Mouse Ubqln4 (protein-coding), Rat Ubqln4 (protein-coding)

Sources

Gene Overview from Genome Browser Top Help

(Human) GRCh37 - chr1:156005092..156023585 (18.49 kb) View in Genome Browser

(Mouse) NCBIM37 - chr3:88357638..88373647 (161 kb) View in Genome Browser

(Rat) RGSC3.4 - chr2:180669525..180684724 (15.20 kb) View in Genome Browser

HaemAtlas Expression from HaemAtlas Top Help

HaemAtlas Expression Table for UBQLN4:

Beta Cell Expression from Beta Cell Gene Atlas Top Help

Cell Types Showing Expression: Available

Users should be aware that the scale represents a rank within an experiment rather than a normalized expression signal.

Human					Mouse			Rat
ductal cells	exocrine pancreas	pancreatic islets	primary beta cells	Pancreatic Islets MPSS	beta cell line	pancreatic islets	whole pancreas	alpha cell	beta cell line	pancreatic islets	primary beta cells	whole pancreas
			no data

Expression Legend

Tissue Expression from GNF Gene Atlas Top Help

Tissues Showing Expression: Available

Users should be aware that the scale represents a rank within an experiment rather than a normalized expression signal.

Expression Legend

Interactions Top Help

Interactions Table for UBQLN4:

The UBQLN4 interactions are shown below. Each row lists the two interactors, the sources which document this as an interaction, a classification of the interaction as empirical or predicted, and Pubmed IDs (if any) for the interaction.

The table of interactions is downloadable as a text file. Please note that the text file will not include data from HPRD due to restrictions imposed by the HPRD funding sources.

Interactor	Interactor	Sources	Classification	Pubmed IDs
UBQLN4	ARL4C	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	STAM2	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	CDSN	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	NXF1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	AGR2	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	RAI2	HPRD, IntAct	empirical	16713569
UBQLN4	RNPS1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	PDIA5	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	ERP29	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	YWHAQ	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	IMMT	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	CPSF6	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	PLA2G16	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	DTX2	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	C1QTNF1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	ERP27	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	ZG16B	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	SMCR7	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	COL8A1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	COPB1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	CSTF2	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	ITPRIPL1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	CTSB	BioGRID	empirical	11162551
UBQLN4	DMPK	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	EDN1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	EEF1A1	HPRD, MINT, IntAct, BioGRID	empirical	16169070
UBQLN4	ELF5	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	CCDC107	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	FKBP2	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	TRIM32	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	SCMH1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	TNRC6B	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	CSTF2T	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	ZFPM2	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	NOMO1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	GABRD	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	SPAG8	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	GDI1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	HAVCR1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	GJA1	IntAct	empirical	20127391
UBQLN4	RNF11	HPRD, MINT	empirical	15231748
UBQLN4	DKK3	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	PCDH17	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	GPX7	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	TRIB2	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	TFCP2L1	BioGRID	empirical	20362541
UBQLN4	UBQLN2	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	UBQLN1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	EFEMP2	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	HK2	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	HSPA5	BioGRID	empirical	11162551
UBQLN4	ANKRD13D	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	IGFBP6	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	IGHM	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	IGLC1	MINT	empirical	16713569
UBQLN4	IMPDH2	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	AREG	HPRD	empirical	16713569
UBQLN4	NOTCH2NL	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	STMN1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	NOMO3	HPRD	empirical	16713569
UBQLN4	SMAD3	IntAct	empirical	21988832
UBQLN4	SMAD9	HPRD, MINT	empirical	15231748
UBQLN4	MDK	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	MDM2	HPRD	empirical	17290220
UBQLN4	CD99	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	MLLT6	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	NME3	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	NPHP1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	NPPA	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	OAT	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	ORC5	IntAct	empirical	21988832
UBQLN4	SERPINE1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	PCDH8	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	CEND1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	BPIFA1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	ZDHHC3	MINT, IntAct	empirical	16713569
UBQLN4	WAC	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	FKBP7	BioGRID	empirical	11162551
UBQLN4	CYB5R1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	DNAJB11	BioGRID	empirical	21900206
UBQLN4	SERPINI2	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	PIN1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	EPDR1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	PPIB	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	PPIC	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	UBR7	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	KLHL26	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	SRGN	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	FAM48A	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	PRPF40A	HPRD, MINT, IntAct	empirical	16713569 15231748
UBQLN4	EAPP	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	C19orf10	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	PRL	BioGRID	empirical	11162551
UBQLN4	UBQLN4	HPRD, MINT, IntAct	empirical	16713569 11001934
UBQLN4	PMEPA1	HPRD, IntAct	empirical	16713569
UBQLN4	PSMD4	BioGRID	empirical	15280365
UBQLN4	PELI2	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	PBXIP1	HPRD, IntAct	empirical	16713569
UBQLN4	MIF4GD	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	KLHDC5	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	PTN	HPRD, MINT, IntAct, BioGRID	empirical	16169070 16713569
UBQLN4	QSOX1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	PTPRN	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	PTPRN2	HPRD, IntAct	empirical	16713569
UBQLN4	SCAF1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	RAD23A	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	RIC8A	HPRD, IntAct	empirical	16713569
UBQLN4	ROBO2	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	RPN1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	RXRA	HPRD, MINT, IntAct, BioGRID	empirical	16169070
UBQLN4	ATXN1	HPRD, MINT, IntAct, BioGRID	empirical	11001934 16713569
UBQLN4	CCL21	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	SEMG1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	MOAP1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	SRSF2	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	SCG5	HPRD, MINT, IntAct, BioGRID	empirical	16713569 16169070
UBQLN4	CCDC136	HPRD, IntAct	empirical	16713569
UBQLN4	CCDC14	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	RSRC2	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	ZG16	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	SMARCB1	HPRD, MINT, IntAct, BioGRID	empirical	16169070
UBQLN4	SPINT1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	SPP1	HPRD, MINT, IntAct, BioGRID	empirical	16713569 11162551
UBQLN4	HSPA13	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	TFF1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	TGFB1I1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	TRAF2	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	UBC	BioGRID	empirical	15280365 20940304 21139048 21890473 21906983
UBQLN4	UROS	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	VIP	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	LAT2	MINT, IntAct	empirical	16713569
UBQLN4	ZNF205	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	SCG2	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	C11orf49	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	FA2H	HPRD, MINT	empirical	16713569
UBQLN4	BAG6	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	CCDC134	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	CCDC33	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	GKAP1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	ADAM33	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	RBM10	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	FZD7	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	ADPGK	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	PIP4K2B	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	USMG5	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	C1orf94	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	RUNX1T1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	SERPINH1	HPRD, BioGRID	empirical	11162551
UBQLN4	TNFRSF14	BioGRID	empirical	21900206
UBQLN4	NAE1	HPRD, MINT, IntAct, BioGRID	empirical	16169070
UBQLN4	CACNA1G	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	UNC119	HPRD, MINT, IntAct, BioGRID	empirical	16169070
UBQLN4	RNF185	BioGRID	empirical	17558393
UBQLN4	HGS	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	PNMA1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	PDLIM7	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	ZBTB22	HPRD, MINT, IntAct, BioGRID	empirical	16169070
UBQLN4	ATPIF1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	CRIPT	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	PICK1	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	HERPUD1	BioGRID	empirical	18307982
UBQLN4	DAZAP2	HPRD, MINT, IntAct	empirical	16713569
UBQLN4	FGFBP1	HPRD, MINT, IntAct	empirical	16713569

Cross-Reference to Pathways and GO Terms Top Help

View all

KEGG Network: 1

Biocarta: None available

Reactome: None available

NCI-Nature Pathway Interaction Database: None available

Gene Ontology: 10

Publications from PubMed Top Help

Publications: 38

A directed protein interaction network for investigating intracellular signal transduction.
Vinayagam A, Stelzl U, Foulle R, Plassmann S, Zenkner M, Timm J, Assmus HE, Andrade-Navarro MA, Wanker EE
Sci Signal. 2011
PubMed ID: 21900206
A conditional knockout resource for the genome-wide study of mouse gene function.
Skarnes WC, Rosen B, West AP, Koutsourakis M, Bushell W, Iyer V, Mujica AO, Thomas M, Harrow J, Cox T, Jackson D, Severin J, Biggs P, Fu J, Nefedov M, de Jong PJ, Stewart AF, Bradley A
Nature. 2011
PubMed ID: 21677750
Initial characterization of the human central proteome.
Burkard TR, Planyavsky M, Kaupe I, Breitwieser FP, Bürckstümmer T, Bennett KL, Superti-Furga G, Colinge J
BMC Syst Biol. 2011
PubMed ID: 21269460
Ubiquitin-independent proteasomal degradation of endoplasmic reticulum-localized connexin43 mediated by CIP75.
Su V, Nakagawa R, Koval M, Lau AF
J Biol Chem. 2010
PubMed ID: 20940304
Mumps virus small hydrophobic protein targets ataxin-1 ubiquitin-like interacting protein (ubiquilin 4).
Woznik M, Rödner C, Lemon K, Rima B, Mankertz A, Finsterbusch T
J Gen Virol. 2010
PubMed ID: 20702650
An Oct4-centered protein interaction network in embryonic stem cells.
van den Berg DL, Snoek T, Mullin NP, Yates A, Bezstarosti K, Demmers J, Chambers I, Poot RA
Cell Stem Cell. 2010
PubMed ID: 20362541
Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach.
Gauci S, Helbig AO, Slijper M, Krijgsveld J, Heck AJ, Mohammed S
Anal Chem. 2009
PubMed ID: 19413330
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells.
Hansen GM, Markesich DC, Burnett MB, Zhu Q, Dionne KM, Richter LJ, Finnell RH, Sands AT, Zambrowicz BP, Abuin A
Genome Res. 2008
PubMed ID: 18799693
Herp enhances ER-associated protein degradation by recruiting ubiquilins.
Kim TY, Kim E, Yoon SK, Yoon JB
Biochem Biophys Res Commun. 2008
PubMed ID: 18307982
A novel connexin43-interacting protein, CIP75, which belongs to the UbL-UBA protein family, regulates the turnover of connexin43.
Li X, Su V, Kurata WE, Jin C, Lau AF
J Biol Chem. 2008
PubMed ID: 18079109
EUCOMM--the European conditional mouse mutagenesis program.
Friedel RH, Seisenberger C, Kaloff C, Wurst W
Brief Funct Genomic Proteomic. 2007
PubMed ID: 17967808
Wnt signalling regulates paxillin ubiquitination essential for mesodermal cell motility.
Iioka H, Iemura S, Natsume T, Kinoshita N
Nat Cell Biol. 2007
PubMed ID: 17558393
ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage.
Matsuoka S, Ballif BA, Smogorzewska A, McDonald ER, Hurov KE, Luo J, Bakalarski CE, Zhao Z, Solimini N, Lerenthal Y, Shiloh Y, Gygi SP, Elledge SJ
Science. 2007
PubMed ID: 17525332
The deubiquitinating enzyme USP2a regulates the p53 pathway by targeting Mdm2.
Stevenson LF, Sparks A, Allende-Vega N, Xirodimas DP, Lane DP, Saville MK
EMBO J. 2007
PubMed ID: 17290220
A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration.
Lim J, Hao T, Shaw C, Patel AJ, Szabó G, Rual JF, Fisk CJ, Li N, Smolyar A, Hill DE, Barabási AL, Vidal M, Zoghbi HY
Cell. 2006
PubMed ID: 16713569
The DNA sequence and biological annotation of human chromosome 1.
Gregory SG, Barlow KF, McLay KE, Kaul R, Swarbreck D, Dunham A, Scott CE, Howe KL, Woodfine K, Spencer CC, Jones MC, Gillson C, Searle S, Zhou Y, Kokocinski F, McDonald L, Evans R, Phillips K, Atkinson A, Cooper R, Jones C, Hall RE, Andrews TD, Lloyd C, Ainscough R, Almeida JP, Ambrose KD, Anderson F, Andrew RW, Ashwell RI, Aubin K, Babbage AK, Bagguley CL, Bailey J, Beasley H, Bethel G, Bird CP, Bray-Allen S, Brown JY, Brown AJ, Buckley D, Burton J, Bye J, Carder C, Chapman JC, Clark SY, Clarke G, Clee C, Cobley V, Collier RE, Corby N, Coville GJ, Davies J, Deadman R, Dunn M, Earthrowl M, Ellington AG, Errington H, Frankish A, Frankland J, French L, Garner P, Garnett J, Gay L, Ghori MR, Gibson R, Gilby LM, Gillett W, Glithero RJ, Grafham DV, Griffiths C, Griffiths-Jones S, Grocock R, Hammond S, Harrison ES, Hart E, Haugen E, Heath PD, Holmes S, Holt K, Howden PJ, Hunt AR, Hunt SE, Hunter G, Isherwood J, James R, Johnson C, Johnson D, Joy A, Kay M, Kershaw JK, Kibukawa M, Kimberley AM, King A, Knights AJ, Lad H, Laird G, Lawlor S, Leongamornlert DA, Lloyd DM, Loveland J, Lovell J, Lush MJ, Lyne R, Martin S, Mashreghi-Mohammadi M, Matthews L, Matthews NS, McLaren S, Milne S, Mistry S, Moore MJ, Nickerson T, O'Dell CN, Oliver K, Palmeiri A, Palmer SA, Parker A, Patel D, Pearce AV, Peck AI, Pelan S, Phelps K, Phillimore BJ, Plumb R, Rajan J, Raymond C, Rouse G, Saenphimmachak C, Sehra HK, Sheridan E, Shownkeen R, Sims S, Skuce CD, Smith M, Steward C, Subramanian S, Sycamore N, Tracey A, Tromans A, Van Helmond Z, Wall M, Wallis JM, White S, Whitehead SL, Wilkinson JE, Willey DL, Williams H, Wilming L, Wray PW, Wu Z, Coulson A, Vaudin M, Sulston JE, Durbin R, Hubbard T, Wooster R, Dunham I, Carter NP, McVean G, Ross MT, Harrow J, Olson MV, Beck S, Rogers J, Bentley DR, Banerjee R, Bryant SP, Burford DC, Burrill WD, Clegg SM, Dhami P, Dovey O, Faulkner LM, Gribble SM, Langford CF, Pandian RD, Porter KM, Prigmore E
Nature. 2006
PubMed ID: 16710414
A human protein-protein interaction network: a resource for annotating the proteome.
Stelzl U, Worm U, Lalowski M, Haenig C, Brembeck FH, Goehler H, Stroedicke M, Zenkner M, Schoenherr A, Koeppen S, Timm J, Mintzlaff S, Abraham C, Bock N, Kietzmann S, Goedde A, Toksöz E, Droege A, Krobitsch S, Korn B, Birchmeier W, Lehrach H, Wanker EE
Cell. 2005
PubMed ID: 16169070
Antisense transcription in the mammalian transcriptome.
Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J, Mattick J, Hume DA, Lipovich L, Batalov S, Engström PG, Mizuno Y, Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z, Lenhard B, Wahlestedt C, RIKEN Genome Exploration Research Group, Genome Science Group (Genome Network Project Core Group), FANTOM Consortium
Science. 2005
PubMed ID: 16141073
The transcriptional landscape of the mammalian genome.
Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R, Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T, Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M, Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M, Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A, Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L, Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L, Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K, Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R, Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V, Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL, Sandelin A, Schneider C, Schönbach C, Sekiguchi K, Semple CA, Seno S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D, Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y, Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM, Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T, Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H, Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K, Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y, Suzuki H, Kawai J, Hayashizaki Y, FANTOM Consortium, RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science. 2005
PubMed ID: 16141072
Gene and alternative splicing annotation with AIR.
Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M, Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail S, Li P, Sutton G
Genome Res. 2005
PubMed ID: 15632090
Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas.
Watahiki A, Waki K, Hayatsu N, Shiraki T, Kondo S, Nakamura M, Sasaki D, Arakawa T, Kawai J, Harbers M, Hayashizaki Y, Carninci P
Nat Methods. 2004
PubMed ID: 15782199
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
Gerhard DS, Wagner L, Feingold EA, Shenmen CM, Grouse LH, Schuler G, Klein SL, Old S, Rasooly R, Good P, Guyer M, Peck AM, Derge JG, Lipman D, Collins FS, Jang W, Sherry S, Feolo M, Misquitta L, Lee E, Rotmistrovsky K, Greenhut SF, Schaefer CF, Buetow K, Bonner TI, Haussler D, Kent J, Kiekhaus M, Furey T, Brent M, Prange C, Schreiber K, Shapiro N, Bhat NK, Hopkins RF, Hsie F, Driscoll T, Soares MB, Casavant TL, Scheetz TE, Brown-stein MJ, Usdin TB, Toshiyuki S, Carninci P, Piao Y, Dudekula DB, Ko MS, Kawakami K, Suzuki Y, Sugano S, Gruber CE, Smith MR, Simmons B, Moore T, Waterman R, Johnson SL, Ruan Y, Wei CL, Mathavan S, Gunaratne PH, Wu J, Garcia AM, Hulyk SW, Fuh E, Yuan Y, Sneed A, Kowis C, Hodgson A, Muzny DM, McPherson J, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madari A, Young AC, Wetherby KD, Granite SJ, Kwong PN, Brinkley CP, Pearson RL, Bouffard GG, Blakesly RW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Griffith M, Griffith OL, Krzywinski MI, Liao N, Morin R, Morrin R, Palmquist D, Petrescu AS, Skalska U, Smailus DE, Stott JM, Schnerch A, Schein JE, Jones SJ, Holt RA, Baross A, Marra MA, Clifton S, Makowski KA, Bosak S, Malek J, MGC Project Team
Genome Res. 2004
PubMed ID: 15489334
The effects of the polyglutamine repeat protein ataxin-1 on the UbL-UBA protein A1Up.
Riley BE, Xu Y, Zoghbi HY, Orr HT
J Biol Chem. 2004
PubMed ID: 15280365
Functional proteomics mapping of a human signaling pathway.
Colland F, Jacq X, Trouplin V, Mougin C, Groizeleau C, Hamburger A, Meil A, Wojcik J, Legrain P, Gauthier JM
Genome Res. 2004
PubMed ID: 15231748
Genome sequence of the Brown Norway rat yields insights into mammalian evolution.
Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, Scherer S, Scott G, Steffen D, Worley KC, Burch PE, Okwuonu G, Hines S, Lewis L, DeRamo C, Delgado O, Dugan-Rocha S, Miner G, Morgan M, Hawes A, Gill R, Celera, Holt RA, Adams MD, Amanatides PG, Baden-Tillson H, Barnstead M, Chin S, Evans CA, Ferriera S, Fosler C, Glodek A, Gu Z, Jennings D, Kraft CL, Nguyen T, Pfannkoch CM, Sitter C, Sutton GG, Venter JC, Woodage T, Smith D, Lee HM, Gustafson E, Cahill P, Kana A, Doucette-Stamm L, Weinstock K, Fechtel K, Weiss RB, Dunn DM, Green ED, Blakesley RW, Bouffard GG, De Jong PJ, Osoegawa K, Zhu B, Marra M, Schein J, Bosdet I, Fjell C, Jones S, Krzywinski M, Mathewson C, Siddiqui A, Wye N, McPherson J, Zhao S, Fraser CM, Shetty J, Shatsman S, Geer K, Chen Y, Abramzon S, Nierman WC, Havlak PH, Chen R, Durbin KJ, Egan A, Ren Y, Song XZ, Li B, Liu Y, Qin X, Cawley S, Worley KC, Cooney AJ, D'Souza LM, Martin K, Wu JQ, Gonzalez-Garay ML, Jackson AR, Kalafus KJ, McLeod MP, Milosavljevic A, Virk D, Volkov A, Wheeler DA, Zhang Z, Bailey JA, Eichler EE, Tuzun E, Birney E, Mongin E, Ureta-Vidal A, Woodwark C, Zdobnov E, Bork P, Suyama M, Torrents D, Alexandersson M, Trask BJ, Young JM, Huang H, Wang H, Xing H, Daniels S, Gietzen D, Schmidt J, Stevens K, Vitt U, Wingrove J, Camara F, Mar Albà M, Abril JF, Guigo R, Smit A, Dubchak I, Rubin EM, Couronne O, Poliakov A, Hübner N, Ganten D, Goesele C, Hummel O, Kreitler T, Lee YA, Monti J, Schulz H, Zimdahl H, Himmelbauer H, Lehrach H, Jacob HJ, Bromberg S, Gullings-Handley J, Jensen-Seaman MI, Kwitek AE, Lazar J, Pasko D, Tonellato PJ, Twigger S, Ponting CP, Duarte JM, Rice S, Goodstadt L, Beatson SA, Emes RD, Winter EE, Webber C, Brandt P, Nyakatura G, Adetobi M, Chiaromonte F, Elnitski L, Eswara P, Hardison RC, Hou M, Kolbe D, Makova K, Miller W, Nekrutenko A, Riemer C, Schwartz S, Taylor J, Yang S, Zhang Y, Lindpaintner K, Andrews TD, Caccamo M, Clamp M, Clarke L, Curwen V, Durbin R, Eyras E, Searle SM, Cooper GM, Batzoglou S, Brudno M, Sidow A, Stone EA, Venter JC, Payseur BA, Bourque G, López-Otín C, Puente XS, Chakrabarti K, Chatterji S, Dewey C, Pachter L, Bray N, Yap VB, Caspi A, Tesler G, Pevzner PA, Haussler D, Roskin KM, Baertsch R, Clawson H, Furey TS, Hinrichs AS, Karolchik D, Kent WJ, Rosenbloom KR, Trumbower H, Weirauch M, Cooper DN, Stenson PD, Ma B, Brent M, Arumugam M, Shteynberg D, Copley RR, Taylor MS, Riethman H, Mudunuri U, Peterson J, Guyer M, Felsenfeld A, Old S, Mockrin S, Collins F, Rat Genome Sequencing Project Consortium
Nature. 2004
PubMed ID: 15057822
Complete sequencing and characterization of 21,243 full-length human cDNAs.
Ota T, Suzuki Y, Nishikawa T, Otsuki T, Sugiyama T, Irie R, Wakamatsu A, Hayashi K, Sato H, Nagai K, Kimura K, Makita H, Sekine M, Obayashi M, Nishi T, Shibahara T, Tanaka T, Ishii S, Yamamoto J, Saito K, Kawai Y, Isono Y, Nakamura Y, Nagahari K, Murakami K, Yasuda T, Iwayanagi T, Wagatsuma M, Shiratori A, Sudo H, Hosoiri T, Kaku Y, Kodaira H, Kondo H, Sugawara M, Takahashi M, Kanda K, Yokoi T, Furuya T, Kikkawa E, Omura Y, Abe K, Kamihara K, Katsuta N, Sato K, Tanikawa M, Yamazaki M, Ninomiya K, Ishibashi T, Yamashita H, Murakawa K, Fujimori K, Tanai H, Kimata M, Watanabe M, Hiraoka S, Chiba Y, Ishida S, Ono Y, Takiguchi S, Watanabe S, Yosida M, Hotuta T, Kusano J, Kanehori K, Takahashi-Fujii A, Hara H, Tanase TO, Nomura Y, Togiya S, Komai F, Hara R, Takeuchi K, Arita M, Imose N, Musashino K, Yuuki H, Oshima A, Sasaki N, Aotsuka S, Yoshikawa Y, Matsunawa H, Ichihara T, Shiohata N, Sano S, Moriya S, Momiyama H, Satoh N, Takami S, Terashima Y, Suzuki O, Nakagawa S, Senoh A, Mizoguchi H, Goto Y, Shimizu F, Wakebe H, Hishigaki H, Watanabe T, Sugiyama A, Takemoto M, Kawakami B, Yamazaki M, Watanabe K, Kumagai A, Itakura S, Fukuzumi Y, Fujimori Y, Komiyama M, Tashiro H, Tanigami A, Fujiwara T, Ono T, Yamada K, Fujii Y, Ozaki K, Hirao M, Ohmori Y, Kawabata A, Hikiji T, Kobatake N, Inagaki H, Ikema Y, Okamoto S, Okitani R, Kawakami T, Noguchi S, Itoh T, Shigeta K, Senba T, Matsumura K, Nakajima Y, Mizuno T, Morinaga M, Sasaki M, Togashi T, Oyama M, Hata H, Watanabe M, Komatsu T, Mizushima-Sugano J, Satoh T, Shirai Y, Takahashi Y, Nakagawa K, Okumura K, Nagase T, Nomura N, Kikuchi H, Masuho Y, Yamashita R, Nakai K, Yada T, Nakamura Y, Ohara O, Isogai T, Sugano S
Nat Genet. 2004
PubMed ID: 14702039
Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention.
Zambrowicz BP, Abuin A, Ramirez-Solis R, Richter LJ, Piggott J, BeltrandelRio H, Buxton EC, Edwards J, Finch RA, Friddle CJ, Gupta A, Hansen G, Hu Y, Huang W, Jaing C, Key BW, Kipp P, Kohlhauff B, Ma ZQ, Markesich D, Payne R, Potter DG, Qian N, Shaw J, Schrick J, Shi ZZ, Sparks MJ, Van Sligtenhorst I, Vogel P, Walke W, Xu N, Zhu Q, Person C, Sands AT
Proc Natl Acad Sci U S A. 2003
PubMed ID: 14610273
BayGenomics: a resource of insertional mutations in mouse embryonic stem cells.
Stryke D, Kawamoto M, Huang CC, Johns SJ, King LA, Harper CA, Meng EC, Lee RE, Yee A, L'Italien L, Chuang PT, Young SG, Skarnes WC, Babbitt PC, Ferrin TE
Nucleic Acids Res. 2003
PubMed ID: 12520002
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.
Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T, Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P, Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH, Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW, Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW, Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U, Smailus DE, Schnerch A, Schein JE, Jones SJ, Marra MA, Mammalian Gene Collection Program Team
Proc Natl Acad Sci U S A. 2002
PubMed ID: 12477932
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, Nogami A, Schönbach C, Gojobori T, Baldarelli R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A, Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V, Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF, Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ, Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL, Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR, Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K, Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R, Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C, Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z, Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N, Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K, Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A, Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M, Waterston R, Lander ES, Rogers J, Birney E, Hayashizaki Y, FANTOM Consortium, RIKEN Genome Exploration Research Group Phase I & II Team
Nature. 2002
PubMed ID: 12466851
Functional annotation of a full-length mouse cDNA collection.
Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y, Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T, Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K, Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W, Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F, Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M, Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N, Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C, Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA, Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J, Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto N, Sasaki H, Sato K, Schönbach C, Seya T, Shibata Y, Storch KF, Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L, Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S, Hayashizaki Y, RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature. 2001
PubMed ID: 11217851
Molecular cloning of a novel ubiquitin-like protein, UBIN, that binds to ER targeting signal sequences.
Matsuda M, Koide T, Yorihuzi T, Hosokawa N, Nagata K
Biochem Biophys Res Commun. 2001
PubMed ID: 11162551
RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer.
Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K, Togawa Y
Genome Res. 2000
PubMed ID: 11076861
Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes.
Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M, Konno H, Okazaki Y, Muramatsu M, Hayashizaki Y
Genome Res. 2000
PubMed ID: 11042159
Identification and characterization of an ataxin-1-interacting protein: A1Up, a ubiquitin-like nuclear protein.
Davidson JD, Riley B, Burright EN, Duvick LA, Zoghbi HY, Orr HT
Hum Mol Genet. 2000
PubMed ID: 11001934
Identification of two paralogous regions mapping to the short and long arms of human chromosome 2 comprising LIS1 pseudogenes.
Fogli A, Giglio S, Arrigo G, Lo Nigro C, Zollo M, Viggiano L, Rocchi M, Archidiacono N, Zuffardi O, Carrozzo R
Cytogenet Cell Genet. 1999
PubMed ID: 10575211
High-efficiency full-length cDNA cloning.
Carninci P, Hayashizaki Y
Methods Enzymol. 1999
PubMed ID: 10349636
Normalization and subtraction: two approaches to facilitate gene discovery.
Bonaldo MF, Lennon G, Soares MB
Genome Res. 1996
PubMed ID: 8889548

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	Human	Mouse	Rat
Entrez Gene	56893	94232	310633
EnsEMBL Gene(s)	ENSG00000160803	ENSMUSG00000008604	ENSRNOG00000019933
Unigene	Hs.283739	Mm.303059	Rn.17785
Homologene	UBQLN4	Ubqln4	Ubqln4
OMIM	605440	N/A	N/A
GeneCards	UBQLN4	N/A	N/A
Beta Cell Genomics	DT.101981956 DT.214071	DT.101195894 DT.533611	N/A
Reactome	N/A	N/A	N/A
Plasma Peptide Atlas	N/A	N/A	N/A
WikiGenes	56893	94232	310633

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