AFF3

  Summary from T1DBase   Top   Help
Gene Description:   AF4/FMR2 family, member 3
Synonyms:   AFF3, LAF-4, 3222402O04Rik, Laf4, MLLT2-like, LAF4, A730046J16, Aff3
Orthologs:   Human AFF3 (protein-coding), Mouse Aff3 (protein-coding), Rat Aff3 (protein-coding)
 
expander Sources
  Regions of Interest Overlapping this feature from T1DBase   Top   Help
Regions Overlapping this Feature:  Human: 1 Mouse: 2 Rat: 1
expander Associated Regions: Available
Regions were calculated based on variants available for a large study with a convincing p-value (P < 5 x 10-8) +/- 0.1cM, and then these regions were examined for genes based on the current set of T1DBase gene spans.
Region Species Chromosomal Location Mb Number of genes Marker
2q11.2 Human chr2:100516689..101049115 0.53 31 rs9653442 rs1160542
expander Linkage Regions: Available
expander Other Regions: Available
  Gene Overview from T1DBase   Top   Help
expander (Human) GRCh37 - chr2:100163715..100759201 (595.49 kb)  View in Genome Browser
expander (Mouse) NCBIM37 - chr1:38234171..38721800 (487.63 kb)  View in Genome Browser
expander (Rat) RGSC3.4 - chr9:37121330..37516836 (395.51 kb)  View in Genome Browser
  Beta Cell Gene Atlas from T1DBase   Top   Help

Users should be aware that the scale represents a rank within an experiment rather than a normalized expression signal.
 
Human Mouse Rat
ductal cells exocrine pancreas pancreatic islets primary beta cells Pancreatic Islets MPSS beta cell line pancreatic islets whole pancreas alpha cell beta cell line pancreatic islets primary beta cells whole pancreas
 
 
 
 
 
 
 
 
 
 
no data
 
no data
expander Expression Legend
  Tissue Expression   Top   Help

Users should be aware that the scale represents a rank within an experiment rather than a normalized expression signal.
 
/expression/atlas-PB_CD14+_Monocytes.png /expression/atlas-PB_CD56+_NK_Cells.png /expression/atlas-PB_CD19-_B_Cells.png /expression/atlas-PB_CD4+_T_Cells.png /expression/atlas-PB_CD8+_T_Cells.png /expression/atlas-PB_BDCA4+_Dendritic_Cells.png /expression/atlas-721_B_Lymphoblasts.png /expression/atlas-Lymph_Node.png /expression/atlas-Thymus.png /expression/atlas-Salivary_Gland.png /expression/atlas-Bone_Marrow.png /expression/atlas-BM_CD34+.png /expression/atlas-Heart.png /expression/atlas-Skeletal_Muscle.png /expression/atlas-Kidney.png /expression/atlas-Liver.png /expression/atlas-Lung.png /expression/atlas-Pancreas.png /expression/atlas-Pancreatic_Islets.png /expression/atlas-Trachea.png /expression/atlas-Pituitary.png /expression/atlas-Thyroid.png /expression/atlas-Amygdala.png /expression/atlas-Caudate_Nucleus.png /expression/atlas-Cerebellum.png /expression/atlas-Hypothalamus.png /expression/atlas-Spinal_cord.png /expression/atlas-Thalamus.png /expression/atlas-Skin.png /expression/atlas-Ovary.png /expression/atlas-Placenta.png /expression/atlas-Prostate.png /expression/atlas-Testis.png /expression/atlas-Uterus.png
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
expander Expression Legend
  HaemAtlas Expression   Top   Help
Symbols represent expression compared with the overall mean. Please click 'HaemAtlasProfile' link below for associated probe mappings and a detailed profile.
CD Marker EB MK CD66b CD14 CD19 CD8 CD4 CD56
Expression Pattern Not Detected Not Detected Not Detected Not Detected High Not Detected Moderate Low HaemAtlasProfile
expander Expression Legend
  Interactions from T1DBase   Top   Help
expander Interactions Table for AFF3:
  Cross-Reference to Pathways and GO Terms   Top   Help
expander View all
KEGG Network: None available
Biocarta: None available
Reactome: None available
NCI-Nature Pathway Interaction Database: None available
expander Gene Ontology: 6
  Publications   Top   Help
expander Type 1 Diabetes Publications: 1
expander Publications: 48
  Model Organism Phenotype Links   Top   Help
This section provides links to model organism phenotype resources. Currently only to mouse phenotypes.
Organism Phenotype Resources
Mouse MGI:106927 IKMC
  External Links   Top   Help
  Human Mouse Rat
Entrez Gene 3899 16764 363220
EnsEMBL Gene(s) ENSG00000144218 ENSMUSG00000037138 ENSRNOG00000018830
Unigene Hs.444414 Mm.336679 Rn.203251
Homologene AFF3 Aff3 Aff3
OMIM 601464 N/A N/A
GeneCards AFF3 N/A N/A
Beta Cell Genomics DT.213449 DT.445740 DT.86837483 DT.40174367 DT.490970 DT.55122602 DT.87039962 N/A
Reactome N/A N/A N/A
Plasma Peptide Atlas N/A N/A N/A
MGI N/A MGI:106927 N/A
WikiGenes 3899 16764 363220
  External resources (dkCOIN) from NIDDK Consortium Interconnectivity Network   Top   Help
dkCOIN_click Relevant resources:
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