HLA-J
| Gene Description: |
major histocompatibility complex, class I, J (pseudogene) |
| Synonyms: |
MGC105145, CDA12, HLA-CDA12, HLA-59, MGC71446, D6S203, HLA-J |
| Orthologs: |
Human HLA-J (pseudo)
|
| |
|
Sources
Sources
|
Possible sources:
|
HomoloGene, MGD, RGD, Ensembl, Inparanoid, OrthoMCL, KEGG
|
|
|
|
Regions of Interest Overlapping this feature from T1DBase
Top
Help
Regions Overlapping this Feature:
Human: 1
Associated Regions: Available
Regions were calculated based on variants available for a large study with a convincing p-value (P < 5 x 10-8) +/- 0.1cM, and then these regions were examined for genes based on the current set of T1DBase gene spans.
Gene Overview from T1DBase
Top
Help
Beta Cell Gene Atlas from T1DBase
Top
Help
| Users should be aware that the scale represents a rank within an experiment rather than a normalized expression signal.
|
| |
|
|
|
no data |
|
no data |
no data |
no data |
no data |
no data |
no data |
no data |
no data |
|
|
Expression Legend
|
|
|
|
The Beta Cell Gene Atlas is a collection of almost all available public microarray
data generated with pancreatic beta cells and related cell lines and types. The
expression data comes from 131 array analyses derived from 28 experiments
(open details in a new window).
The basal (untreated cell) expression signal intensity values in each array
were converted to ranks within the experiments; the highest value was used for
genes represented by more than one probe. The rank values of genes in a given cell
type were averaged with other calculated values from experiments performed with the
same cell type. The rank transformation of the expression values enable comparison
of gene expression across different organisms and tissues.
|
|
A red border around a cell indicates greater certainty in the data;
specifically, the gene has >0.95 probability of being expressed in the tissue.
|
|
| We do not have tissue expression data for this gene. |
Cross-Reference to Pathways and GO Terms
Top
Help
|
|
KEGG Network: None available
|
| |
|
|
|
|
Biocarta: None available
|
| |
|
|
|
|
Reactome: None available
|
| |
|
|
|
|
NCI-Nature Pathway Interaction Database: None available
|
| |
|
|
|
|
Gene Ontology: None available
|
| |
|
|
|
|
|
KEGG Network: None available
|
|
|
|
|
|
|
|
|
|
|
NCI-Nature Pathway Interaction Database: None available
|
|
|
|
|
Gene Ontology: None available
|
|
Publications: 5
-
A major histocompatibility Class I locus contributes to multiple sclerosis susceptibility independently from HLA-DRB1*15:01.
Cree BA, Rioux JD, McCauley JL, Gourraud PA, Goyette P, McElroy J, De Jager P, Santaniello A, Vyse TJ, Gregersen PK, Mirel D, Hafler DA, Haines JL, Pericak-Vance MA, Compston A, Sawcer SJ, Oksenberg JR, Hauser SL, IMAGEN, IMSGC
PLoS One. 2010
PubMed ID: 20593013
-
Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes.
Kimura K, Wakamatsu A, Suzuki Y, Ota T, Nishikawa T, Yamashita R, Yamamoto J, Sekine M, Tsuritani K, Wakaguri H, Ishii S, Sugiyama T, Saito K, Isono Y, Irie R, Kushida N, Yoneyama T, Otsuka R, Kanda K, Yokoi T, Kondo H, Wagatsuma M, Murakawa K, Ishida S, Ishibashi T, Takahashi-Fujii A, Tanase T, Nagai K, Kikuchi H, Nakai K, Isogai T, Sugano S
Genome Res. 2006
PubMed ID: 16344560
-
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.
Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T, Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P, Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH, Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW, Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW, Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U, Smailus DE, Schnerch A, Schein JE, Jones SJ, Marra MA, Mammalian Gene Collection Program Team
Proc Natl Acad Sci U S A. 2002
PubMed ID: 12477932
-
HLA-J, a second inactivated class I HLA gene related to HLA-G and HLA-A. Implications for the evolution of the HLA-A-related genes.
Messer G, Zemmour J, Orr HT, Parham P, Weiss EH, Girdlestone J
J Immunol. 1992
PubMed ID: 1602142
-
A physical map including a new class I gene (cda12) of the human major histocompatibility complex (A2/B13 haplotype) derived from a monosomy 6 mutant cell line.
Ragoussis J, Bloemer K, Pohla H, Messer G, Weiss EH, Ziegler A
Genomics. 1989
PubMed ID: 2497062
Model Organism Phenotype Links
Top
Help
This section provides links to model organism phenotype resources. Currently only to mouse phenotypes.
No mouse phenotype links available for this gene.
|
|
Human
|
Mouse
|
Rat
|
|
Entrez Gene
|
3137
|
N/A
|
N/A
|
|
EnsEMBL Gene(s)
|
N/A
|
N/A
|
N/A
|
|
Unigene
|
Hs.720762
|
N/A
|
N/A
|
|
Homologene
|
HLA-J
|
N/A
|
N/A
|
|
OMIM
|
N/A
|
N/A
|
N/A
|
|
GeneCards
|
HLA-J
|
N/A
|
N/A
|
|
Beta Cell Genomics
|
N/A
|
N/A
|
N/A
|
|
Reactome
|
N/A
|
N/A
|
N/A
|
|
Plasma Peptide Atlas
|
N/A
|
N/A
|
N/A
|
|
MGI
|
N/A
|
N/A
|
N/A
|
|
WikiGenes
|
3137
|
N/A
|
N/A
|
|
External resources (dkCOIN) from NIDDK Consortium Interconnectivity Network
Top
Help
Relevant resources:
Home 
