CTLA4

  Summary from T1DBase   Top   Help
Gene Description:   cytotoxic T-lymphocyte-associated protein 4
Synonyms:   ICOS, CELIAC3, CTLA4, Ctla-4, sCTLA4, Cd152, IDDM12, GRD4, CTLA-4, GSE, Ly-56, CD, CD152, Ctla4
Orthologs:   Human CTLA4 (protein-coding), Mouse Ctla4 (protein-coding), Rat Ctla4 (protein-coding)
 
expander Sources
  Regions of Interest Overlapping this feature from T1DBase   Top   Help
Regions Overlapping this Feature:  Human: 1 Mouse: 2 Rat: 1
expander Associated Regions: Available
Regions were calculated based on variants available for a large study with a convincing p-value (P < 5 x 10-8) +/- 0.1cM, and then these regions were examined for genes based on the current set of T1DBase gene spans.
Region Species Chromosomal Location Mb Number of genes Marker
2q33.2 Human chr2:204672809..204820058 0.15 12 rs3087243
expander Linkage Regions: Available
expander Other Regions: Available
  Gene Overview from T1DBase   Top   Help
expander (Human) GRCh37 - chr2:204732504..204743422 (10.92 kb)  View in Genome Browser
expander (Mouse) NCBIM37 - chr1:60943844..60972676 (28.83 kb)  View in Genome Browser
expander (Rat) RGSC3.4 - chr9:59495773..59501300 (5.53 kb)  View in Genome Browser
  Beta Cell Gene Atlas from T1DBase   Top   Help

Users should be aware that the scale represents a rank within an experiment rather than a normalized expression signal.
 
Human Mouse Rat
ductal cells exocrine pancreas pancreatic islets primary beta cells Pancreatic Islets MPSS beta cell line pancreatic islets whole pancreas alpha cell beta cell line pancreatic islets primary beta cells whole pancreas
 
 
 
no data  
 
 
 
 
 
 
 
 
expander Expression Legend
  Tissue Expression   Top   Help

Users should be aware that the scale represents a rank within an experiment rather than a normalized expression signal.
 
/expression/atlas-PB_CD14+_Monocytes.png /expression/atlas-PB_CD56+_NK_Cells.png /expression/atlas-PB_CD19-_B_Cells.png /expression/atlas-PB_CD4+_T_Cells.png /expression/atlas-PB_CD8+_T_Cells.png /expression/atlas-PB_BDCA4+_Dendritic_Cells.png /expression/atlas-721_B_Lymphoblasts.png /expression/atlas-Lymph_Node.png /expression/atlas-Thymus.png /expression/atlas-Salivary_Gland.png /expression/atlas-Bone_Marrow.png /expression/atlas-BM_CD34+.png /expression/atlas-Heart.png /expression/atlas-Skeletal_Muscle.png /expression/atlas-Kidney.png /expression/atlas-Liver.png /expression/atlas-Lung.png /expression/atlas-Pancreas.png /expression/atlas-Pancreatic_Islets.png /expression/atlas-Trachea.png /expression/atlas-Pituitary.png /expression/atlas-Thyroid.png /expression/atlas-Amygdala.png /expression/atlas-Caudate_Nucleus.png /expression/atlas-Cerebellum.png /expression/atlas-Hypothalamus.png /expression/atlas-Spinal_cord.png /expression/atlas-Thalamus.png /expression/atlas-Skin.png /expression/atlas-Ovary.png /expression/atlas-Placenta.png /expression/atlas-Prostate.png /expression/atlas-Testis.png /expression/atlas-Uterus.png
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
expander Expression Legend
  HaemAtlas Expression   Top   Help
Symbols represent expression compared with the overall mean. Please click 'HaemAtlasProfile' link below for associated probe mappings and a detailed profile.
CD Marker EB MK CD66b CD14 CD19 CD8 CD4 CD56
Expression Pattern Not Detected Not Detected Not Detected Not Detected Not Detected High High Not Detected HaemAtlasProfile
expander Expression Legend
  Interactions from T1DBase   Top   Help
expander Interactions Table for CTLA4:
  Cross-Reference to Pathways and GO Terms   Top   Help
expander View all
expander KEGG Network: 4
expander Biocarta: 1
expander Reactome: 2
expander NCI-Nature Pathway Interaction Database: 1
expander Gene Ontology: 14
  Publications   Top   Help
expander Type 1 Diabetes Publications: 136
expander Publications: 802
  Model Organism Phenotype Links   Top   Help
This section provides links to model organism phenotype resources. Currently only to mouse phenotypes.
Organism Phenotype Resources
Mouse MGI:88556 IKMC
  External Links   Top   Help
  Human Mouse Rat
Entrez Gene 1493 12477 63835
EnsEMBL Gene(s) ENSG00000163599 ENSMUSG00000026011 ENSRNOG00000010336
Unigene Hs.247824 Mm.390 Rn.10259
Homologene CTLA4 Ctla4 Ctla4
OMIM 123890 N/A N/A
GeneCards CTLA4 N/A N/A
Beta Cell Genomics DT.40126443 DT.91756479 DT.40181215 DT.99854682 N/A
Reactome P16410 N/A N/A
Plasma Peptide Atlas N/A N/A N/A
MGI N/A MGI:88556 N/A
WikiGenes 1493 12477 63835
  External resources (dkCOIN) from NIDDK Consortium Interconnectivity Network   Top   Help
dkCOIN_click Relevant resources:
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